Alistipes indistinctus: AI2BBH_11910
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Entry
AI2BBH_11910 CDS
T06978
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ait
Alistipes indistinctus
Pathway
ait02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ait00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AI2BBH_11910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ait03021
]
AI2BBH_11910
Transcription machinery [BR:
ait03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AI2BBH_11910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
HTH_20
HTH_28
DnaD_N
UBA_HYPK
Motif
Other DBs
NCBI-ProteinID:
BCG54145
LinkDB
All DBs
Position
complement(1535634..1536494)
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AA seq
286 aa
AA seq
DB search
MRQLKITKSITNRESASLDKYLQEIGKEDLITVEEEVDLAQRIKKGDKEALEKLTRANLR
FVVSVAKQYQNQGLSLPDLINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNQVGSLNKINKAFARFEQEHERTPSPEELANELDIPKEKVTDTLRVSGRHV
SVDAPFADGEDNSLLDVLVNNDSPIADRGLINESLSTEVDRALSTLTDRERDIIKYFFGI
GCSEMTLEEIGEKFGLTRERVRQIKEKAIRRLRHSTRSKLLKSYLG
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgagacaactaaaaatcaccaagtcgattaccaaccgcgaaagcgcttcgctggacaag
tacctgcaggagatcggtaaagaggacttgatcaccgtcgaggaagaggtcgatttggcc
caacgcatcaaaaaaggggacaaagaggcactcgagaaactgacccgcgcgaacctgcgc
ttcgtcgtttcggtggccaagcagtaccagaatcagggattgtcgctacccgacctgatc
aacgagggaaacctcggtctgatcaaagccgcggagaaattcgacgagacgaggggattc
aaattcatctcctacgccgtatggtggattcgccaatcgatcctgcaggcactggccgag
cagagccgtatcgtgcggctcccgctgaaccaggtgggatcactcaacaagatcaacaaa
gcgttcgcccgcttcgaacaggaacacgagcgcacgccgtcacccgaggaactggccaac
gaactggatattccgaaggaaaaagtgaccgatacgctgcgcgtttcgggccgccatgtc
tcggtagacgcaccgttcgccgacggcgaagacaactcgctgctcgacgtactggtcaac
aacgactctccgatcgccgaccgaggcctgatcaacgaatcgttgagcaccgaggtggat
cgcgctttatcgacgctgaccgaccgtgagcgcgacatcatcaagtacttcttcggtatc
ggttgctcggaaatgaccctcgaggagatcggcgaaaagttcggcctgacgcgtgagcgt
gtacgccagatcaaggaaaaggcaatccgccgcttgcgccacagcacacgcagcaaactg
ctgaaatcctacctgggataa
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