Amycolatopsis japonica: AJAP_04095
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Entry
AJAP_04095 CDS
T03225
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aja
Amycolatopsis japonica
Pathway
aja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AJAP_04095 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aja03400
]
AJAP_04095 (mfd)
Enzymes [BR:
aja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AJAP_04095 (mfd)
DNA repair and recombination proteins [BR:
aja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AJAP_04095 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AIG73742
UniProt:
A0A075UI82
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All DBs
Position
803263..806745
Genome browser
AA seq
1160 aa
AA seq
DB search
MLELQGAIATRQLVAGALAADEGAGRPVLAVTATGREADELTASLKSFLGEGAVVDFPSW
ETLPHERLSPRADTVGRRLEVLHRLKTGSDGLRVVVATVRSLIQPMAPGLGSLAPIDLVV
GEEQSFEGLLERLVELAYTRVDMVEKRGEFAVRGGILDLFGPTAQHPVRVEFWGDEVSEI
RAFAVSDQRSLPGEIQHVSAPPCRELLLTEPVRAKAAELATTYEADAQLTEMLTKLSGGI
PVEGMEALIPVLCEGELDLLTDAMPQGTHVLLADPEKIRARAADLVRTGQEFLEASWTTA
AAGGQAPIDLGASAYRDLAEIAKHAQETKRPWWTLTQLASDDPDVYRVSIEAAPNYRGEV
ERATTDLRAHTAAGGTAVLVVAGHGTAARAVEQLSAGDVPASLAEGITGPLTAGVVTVTC
GGLSDGFVSPERALVVLSESDLTGRGSGAGTSTKDFSTKMPSRRRNAVDPLALKAGDYVV
HDQHGIGRFVEMVQRTVAGATREYLLLEYASSKRGHPGDRLFVPTDQLDEVSRYVGGELP
TLNKLGGSDWKNTKAKAKKAVKEIAAELVQLYAARQAAPGHAFAQDTPWQGELEDAFPFT
ETNDQLAAIDEVKSDMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTL
LAQQHLNTFTERMSSFPVKIKGLSRFTNKAESDAILEQLAAGDVDIVIGTHRLLQTGIRY
KDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPP
EDRHPILTYVGAYDDKQVGAAIRRELLRDGQVFYVHNRVSSIEKAAKRIRELVPEARVVT
AHGQMNEEKLEKIIQGFWENEYDVLVCTTIVETGLDISNANTLLVERGDLLGLAQLHQLR
GRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILG
AEQSGHIAGVGFDLYVRLVGEAVDAFRRHAGAETSEEEELAEVRVDLPVDAHIPHDYVPG
ERLRLEAYRKIAAAPDQAGLDAVREELIDRYGQPPAPVRRLLAVAAFRHTCRAAGVTEVA
VQGTSIRFAPLPLADSQMVRLKRLYPKALYKAVTNTVSVPKPTEGPAGGRMGAPALRDEE
LLDWCAKLLTNLMKSPAPVA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgaactccagggcgcgatcgccacccgccagctggtcgccggtgccctcgccgcg
gacgagggcgccggccgccccgtgctcgcggtgacggccaccggccgcgaggcggacgaa
ttgaccgcttccctgaagtcgttcctcggcgaaggcgccgtcgtcgacttcccgtcctgg
gagacgctgccgcacgagcggctgtccccgcgggcggacaccgtcgggcggcggctggag
gtgctgcaccggctcaagacgggctcggacggtctgcgcgtcgtcgtcgcgaccgtccgc
agcctgatccagccgatggcgcccgggctcggttcgctcgcgccgatcgacctggtcgtc
ggcgaggagcagagcttcgaagggctcttggagcggctggtcgagctcgcgtacacgcgg
gtggacatggtcgagaagcgcggcgagttcgccgtgcgcggcggcatcctcgacctgttc
gggccgacggcgcagcatccggtgcgggtcgagttctggggcgacgaggtcagcgagatc
cgcgcgttcgcggtgtcggaccagcgctcgctgcccggggagatccagcacgtcagcgcg
ccgccgtgccgtgagctgctgctcaccgagccggtccgcgcgaaggccgccgagctcgcg
acgacgtacgaggcggacgcgcagctcaccgagatgctcaccaagctttccggcgggatc
cccgtcgagggcatggaggcgctcatccccgtgctgtgcgagggcgagctggacctgctg
accgacgcgatgccccagggcacgcacgtcctgctggccgatccggagaagatccgcgcc
cgcgcggccgatctggtccgcacggggcaggagttcctcgaagcgtcctggaccacggcc
gccgcgggcggtcaggcgccgatcgacctcggggcgtccgcgtaccgggacctcgcggag
atcgcgaagcacgctcaggagacgaagcgcccttggtggacgctgacgcagctggcgagc
gacgatcccgacgtttaccgcgtctcgatcgaggccgcgccgaactatcgcggcgaggtc
gagcgcgcgacgaccgatctgcgcgcccacacggcggcgggcgggacggccgtgctcgtc
gtcgccgggcacggcaccgcggcccgcgccgtcgagcagctgtcggcgggagatgtcccc
gcgtcgctcgccgaaggcatcaccggtccgctgacggccggcgtcgtgacggtgacgtgc
ggcggtctgtcggacggtttcgtgtcgccggagcgcgccctcgtggtgctgtccgaatcg
gacctcaccggtcgcggctcgggcgccggaacgtccacaaaggacttcagcaccaagatg
ccgtcgcggcgccgcaacgccgtcgacccgctcgccctcaaggcgggcgactacgtcgtg
cacgatcagcacggcatcggccggttcgtcgaaatggtgcagcgcaccgtcgccggcgcg
acccgcgagtacctgctgctggagtacgcctcctccaaacgcgggcatccgggggaccgg
ctgttcgtcccgaccgaccagctcgacgaggtctcccgctacgtcggtggcgagttgccc
acgctgaacaagctcggcggatcggactggaagaacaccaaggccaaggcgaagaaggcg
gtcaaggagatcgccgccgaactcgtgcagctctacgccgcgcggcaggccgcgccgggg
cacgcgttcgcgcaggacacgccgtggcagggcgaactcgaggacgccttcccgttcacc
gagaccaacgaccagctcgccgcgatcgacgaggtcaagtcggatatggaacgcggcgtc
ccgatggaccgcgtcatctgcggcgacgtgggctacggcaagaccgagatcgcggtgcgc
gcggcgttcaaggccgtccaggacggcaagcaggtcgcggtgctggtgccgacgacgctg
ctcgcgcagcagcacctcaacaccttcaccgaacggatgagttcgttcccagtgaagatc
aaggggctttcacggttcacgaacaaggccgagtccgacgccatcctggagcagctggcc
gcgggcgacgtcgacatcgtgatcggtacgcaccgcctgctgcagaccgggatccggtac
aaggatctcggcctggtgatcgtcgacgaggagcagcggttcggcgtcgagcacaaggag
cacatcaaggcgctgcggacccacgtcgacgtgctgaccatgtcggcgacgccgatcccg
cggacgctggagatgtcgctcgccggcatccgcgagatgtccacgatcctgacgccgccc
gaggacaggcacccgatcctgacctacgtcggcgcgtacgacgacaagcaggtcggcgcc
gcgatccggcgcgagctgctgcgtgacggccaagtcttttacgtgcacaacagggtttcc
tcgatcgagaaggccgcgaagcgcattcgcgaactggtgccggaggcgcgcgtcgtcacc
gcgcacgggcagatgaacgaggagaaactcgagaagatcatccagggtttctgggagaac
gagtacgacgtgctcgtctgcaccacgatcgtcgagaccgggctggacatctcgaacgcc
aacacgctgctggtggaacgcggtgacctgctggggctcgcgcagctgcaccagttgcgc
ggccgggtcgggcgtgggcgcgagcgcgggtacgcgtacttcctgtatccgccggaggca
ccgctcaccgagacggcgcacgaccggctcgcgaccatcgcgcagaacaccgaactgggt
gcgggtatggccgtcgcgatgaaggacctggagatccgcggcgcgggcaacatcctcggc
gcggagcagtccgggcacatcgcgggagtcggtttcgacctgtacgtgcggctcgtcggc
gaagcggtcgacgcgttccgccggcacgcgggcgctgaaacctccgaagaggaggagctc
gccgaggtccgcgtggatctcccggtggacgcgcacatcccgcacgactacgtgccgggc
gagcggctgcggctggaggcgtaccgcaagatcgcggccgctcccgaccaggccgggctc
gacgccgtgcgcgaggaactgatcgaccgctacggtcagccgcccgccccggtgcggagg
ctgctcgcggtcgccgcgttccggcacacttgccgtgcggcgggcgtcaccgaggtcgcc
gtccagggcacgtcgatccggttcgcgccgctgccgctggcggattcgcagatggtgcgg
ctgaagcgcttgtaccccaaggctctctacaaggctgtgacgaacacggtctccgtgccg
aagccgacggagggccctgccggtggtcgtatgggcgccccggcgctgcgcgacgaggaa
ttgctggactggtgcgcgaagctgctgacgaatctgatgaagtcgccggcacccgtcgcg
tag
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