Amycolatopsis japonica: AJAP_29475
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Entry
AJAP_29475 CDS
T03225
Name
(GenBank) Hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aja
Amycolatopsis japonica
Pathway
aja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AJAP_29475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aja03019
]
AJAP_29475
03400 DNA repair and recombination proteins [BR:
aja03400
]
AJAP_29475
Enzymes [BR:
aja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AJAP_29475
Messenger RNA biogenesis [BR:
aja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AJAP_29475
DNA repair and recombination proteins [BR:
aja03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AJAP_29475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
AAA_22
GCV_T_C
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
AIG78728
UniProt:
A0A075V0F6
LinkDB
All DBs
Position
6267101..6269206
Genome browser
AA seq
701 aa
AA seq
DB search
MDTSTLRDRAETLLQSLAGEGARLRDDQWTAIEALVAHRRRALVVQRTGWGKSAVYFLAT
ALLRERGNGPTVIISPLLALMRNQISAAARAGIHAATMNSANPQEWDQVQAAIAAGEVDV
LLVSPERLNNPDFRDTVLPKLTASAGLLVVDEAHCISDWGHDFRPDYRRLRTLLKDLPDG
VPVLATTATANDRVATDVAEQLGIGNGGDTLVLRGSLDRESLHLSVAKLPTSQARLAWLA
EHLEELPGSGIIYTLTVAAAHDVAGLLTERGYPVAAYTGKTDPADRQAAEDDLLNNNVKA
LVATSALGMGFDKPDLGFVVHLGAPSSPIAYYQQVGRAGRGVDRAEVILLPGHEDKDIWA
YFGSLAFPDELRVTQVLNALAYADRPLSTPALEPFVELSRSRLEMVLKVLDVDGAVRRVK
GGWEGTGEEWRYDKERYARVSAARTNEQNAMLAYLETDGCRMEYLRKQLDDPEATPCGRC
DNCTGKHWDTTISDDVVDATRQRLRRPGVEVAPRKMWPTGMAGLEVPLSGRLSAGEQAET
GQVVGRVTDVGWGTRLRELVGPSAVDTELPDPVFQACIEVLKGWQWSERPVAVVEVPSAT
RPQLVHSLATKLASIGRLNYLGAMTSTGPPPRQANSAQRLADLWNRLDLSEGLAAEVASA
EGPILLVDDLIDTGWTMTLSARLLRQAGARAVLPFALASTS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtggacacatcgactctccgggatcgtgccgagaccctcctccagtcgttggcgggcgag
ggcgcccggctgcgtgacgaccagtggacggccatcgaggcgctggtcgcgcaccgccgt
cgcgcgctcgtcgtgcagcgcaccgggtggggcaagtccgcggtgtacttcctggccacc
gcgttgctgcgggagcggggcaacggcccgaccgtgatcatctcgccgctgctcgcgctg
atgcgcaaccagatctccgcggcggcgagggcgggcatccacgcggcgacgatgaactcc
gcgaacccgcaggagtgggatcaggtccaggccgcgatcgcggccggtgaggtcgacgtc
ctgctggtcagcccggagcggctcaacaacccggacttccgggacaccgtcctgccgaag
ctgaccgcgagcgccggcctgctcgtggtcgacgaggcgcactgcatctcggactggggg
cacgacttccggccggactaccggcggttgcggacgctgctgaaggatctgcccgacggc
gtcccggtgctcgccaccaccgcgaccgcgaacgaccgcgtggcgaccgacgtcgccgag
cagctcggcatcggcaacgggggcgacaccctcgtcctgcggggcagcctggaccgcgaa
agcctgcacctgtcggtggccaagctgcccacgtcacaggctcggctcgcttggctggcc
gagcatctggaggagctgccgggctccggcatcatctacacgctcaccgtcgccgccgcc
cacgacgtggcgggcctgctgaccgaacgcggctatccggtcgccgcctacaccgggaag
accgaccccgcggaccggcaggcggccgaagacgatctgttgaacaacaacgtcaaggca
ctggtggccacttcggcgctgggcatggggttcgacaagccggatctgggcttcgtcgtc
cacctcggggctccgtcctcccccatcgcgtactaccagcaggtcggccgcgccggacgt
ggcgtcgatcgcgccgaagtgatcttgttgccgggccacgaggacaaggacatctgggcg
tacttcggctcgctcgccttcccggacgaactgcgggtgacccaggtgctcaacgccctg
gcgtacgcggaccgtccactctcgacacccgcgctcgaaccgttcgtcgagctgtcccgg
tcccggctggagatggtcctcaaggtgctggacgtcgacggcgccgtccgccgggtgaag
ggcggctgggaaggcaccggcgaggagtggcggtacgacaaggaacgctatgcgcgggtg
agcgcggcgcggaccaacgagcagaacgccatgctggcctacctcgaaaccgacggctgc
cggatggagtacctgcggaagcagttggacgatccggaggcgacgccctgcggacggtgc
gacaactgcaccggtaagcattgggacaccacgatttccgacgacgtcgtcgacgccacc
cggcagcggttgcgtcgtccgggggtcgaggtggcgccgcggaagatgtggccgaccggg
atggcggggctggaggtcccgctctccggacggctgtcggcgggcgagcaggccgaaacc
ggccaggtcgtcgggcgggtgaccgacgtcggctggggcacgcggctgcgcgagctcgtc
ggaccgtccgcagtggacaccgaactccccgatccggtcttccaggcctgcatcgaggtg
ctcaagggctggcagtggtccgagcgtccggtcgcggtggtggaggtgccgtccgccacc
cggcctcagctggtccacagtctggcgacgaaactggcgtccatcgggcggctgaactac
ctgggcgccatgacttcgacggggccgcccccgcgtcaggcgaacagcgcgcagcgactg
gccgacctctggaatcgcctcgacctttccgaagggctcgccgccgaagtcgcctcggcg
gagggcccgatcctgctggtcgacgacctgatcgacaccggatggacgatgactttgtcc
gcacgcttgctccggcaggccggggctcgcgccgttctgccgttcgctctcgcgagcacc
tcgtaa
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integrated database retrieval system
