Amycolatopsis japonica: AJAP_36425
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Entry
AJAP_36425 CDS
T03225
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aja
Amycolatopsis japonica
Pathway
aja03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AJAP_36425 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aja03021
]
AJAP_36425 (rpoC)
03400 DNA repair and recombination proteins [BR:
aja03400
]
AJAP_36425 (rpoC)
Enzymes [BR:
aja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AJAP_36425 (rpoC)
Transcription machinery [BR:
aja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AJAP_36425 (rpoC)
DNA repair and recombination proteins [BR:
aja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AJAP_36425 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ART
Motif
Other DBs
NCBI-ProteinID:
AIG80087
UniProt:
A0A075V0T7
LinkDB
All DBs
Position
complement(7779317..7783228)
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDLPTLENEIGVERKNLETKRDADIEARAQKLEAD
LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAGRELDRLEEVWTTFTKLDVRQLIADELL
YRELIDRYGEYFTGGMGAEAIQKLATEFDVAAEAESLRDTIRNGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PQVWDVLEEVITGHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLNENADGAGN
AYSSPAEAIMAYDRKALSLHAPIKIRVTDRQPAKADEARLAENGWEPGKAWLAETTLGRV
LFNELLPADYPFINEPMPKKRQAAIVNDLAERYSMTQVAQTLDRLKDAGFYWATRSGVTV
AISDVLVPAGKKAILDEYEGKADQVEKRYQRGQLSHAERNNELVKVWTQATEEVHKIMET
ALPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREIDCGTTRGINMPIGEDIGDGKVL
RDQHVETSVYARNLATDAVDAKGNVVLNAGDDIGDPAIDKLISSGISKVKVRSVLTCESA
VGICATCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VQELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDKLSKRQRLANTP
NGPLGDGDRVAVGQQLLEGTPDPHEVLRVMGPREAQMHLVDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGATDFLPGELPERTKFEAKNRASVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINKYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGSTPGAAVPLDDYDFGRDFR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacttcttcgatgagctccgcatcggcctcgccaccgccgacgacatt
cgtcagtggtccttcggcgaggtgaagaagccggagaccatcaactaccggacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgctccc
gtcacccacatctggtacttcaagggtgttccttcccgcctgggctacctgctcgacctg
gcgccgaaggacctcgagaagatcatctacttcgcggcctacgtgatcaccggtgtgaac
accgagctgcggcacaacgacctgccgaccctcgagaacgagatcggcgtcgagcgcaag
aacctcgagaccaagcgcgacgcggacatcgaggcacgggcgcagaagctggaagccgac
ctggccgagctggaggcggagggcgcgaagtccgacgtccgccgcaaggtcaaggaaggc
ggcgagcgcgagatgcgtcagctgcgtgaccgcgccggtcgcgagctggaccgtctcgag
gaggtctggacgaccttcaccaagctcgacgtgcgtcagctgatcgccgacgagctgctc
taccgcgagctcatcgaccggtacggtgagtacttcaccggcggcatgggcgcggaggcc
atccagaagctggccaccgagttcgacgtcgcggcggaggccgagagcctgcgcgacacc
atccgcaacggcaaggggcagaagaagctccgcgcgctgaagcggctcaaggtcgtcgcg
gccttccaggccaccggcaacgacccgcgcggcatggtgctcgacgccgtcccggtgatc
ccgccggacctgcgcccgatggtccagctcgacggtggccgcttcgccacctccgacctg
aacgacctctaccgccgggtcatcaaccggaacaaccggttgaagcggctgatcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccggtcccggtaaccgcccgctgaag
tcgctgtccgatctgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgtgtcgactactcgggccgttcggtcatcatcgtcggtccgcagctgaagctgcaccag
tgcggtctgccgaaggacatggcgctcgagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcggtcgcgc
ccgcaggtgtgggacgtgctcgaagaggtcatcaccggccacccggtgatgctgaaccgt
gcgccgaccctgcaccgcctcggtatccaggccttcgagccgcagctggtcgaaggcaag
gccatccagctgcacccgctggtctgtgaagcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctcccgctttccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcggcgaacaacatcctttcgccggcgtcgggccgtccgctcgccatgccgcgtctggac
atggtgaccggtctgttccacctgacccggttgaacgagaacgccgacggtgcgggcaac
gcctactcctcgcccgccgaggcgatcatggcgtacgaccgcaaggcgctgagcctgcac
gccccgatcaagatccgcgtcaccgaccgtcagcccgccaaggccgacgaggcgaggctc
gcggagaacggctgggagccgggcaaggcgtggctggccgagaccaccctgggccgcgtg
ctgttcaacgagctgctgccggcggactacccgttcatcaacgagccgatgccgaagaag
cgtcaggccgcgatcgtgaacgacctcgccgagcgctactcgatgacccaggtcgcgcag
accctggaccgcctgaaggacgccggtttctactgggcgacccgttcgggtgtcacggtc
gcgatctccgacgtgctcgtcccggcaggcaagaaggccattctggacgagtacgaaggc
aaggccgaccaggtcgagaagcggtaccagcgtggtcagctgtcgcacgccgagcgcaac
aacgagctcgtcaaggtgtggacgcaggccaccgaagaggtccacaagatcatggagacg
gcgctgccggacgacaacccgatcgcgatgatcgtgaagtcgggcgcggcgggcaacatg
acgcaggtccggtcgctggccggtatgcgtggtctggtgtcgaacccgaagggtgagtac
atcccgcgtccgatcaaggccaacttccgtgaaggcctgtcggtggcggagtacttcatc
gcgacgcacggtgcccgtaagggtctggcggacacggcgctccgtaccgccgactcgggt
tacctgacccgtcgtctggtggacgtgtcgcaggacgtcatcgtccgcgagatcgactgt
ggcaccacccgcggtatcaacatgccgatcggcgaggacatcggcgacggcaaggtcctg
cgcgaccagcacgtcgagaccagcgtgtacgcgcggaacctggcgaccgacgcggtcgac
gccaagggcaacgtcgtgctcaacgccggtgacgacatcggtgacccggcgatcgacaag
ctcatctcgagcgggatctccaaggtcaaggtgcgttcggtgctgacctgcgagtcggcc
gtcggtatctgcgccacctgctacggccggtccatggcgaccggtcagctcgtcgacgtc
ggcgaggccgtgggtatcgtcgcggcccagtcgatcggtgagccgggtacgcagctgacg
atgcgtacgttccaccagggtggtgtcgccggtgacgacatcacgaccggtctgccccgt
gtccaggagctgttcgaagcccgggtcccgaagggcaaggcgccgatcgccgacgtcgat
ggccgcgtgcgcatcgaggagagcgagcggttctggaagatcacgctgatcccggacgac
ggcagcgaagagatcgtcttcgacaagctgtccaagcgtcagcggctcgcgaacaccccg
aacggcccgctgggcgatggtgaccgcgtcgcggtcggccagcagctgctcgaaggcacg
ccggacccgcacgaggtcctgcgggtcatggggccgcgcgaggcgcagatgcacctggtg
gacgaggtccagaaggtgtaccgggcgcagggtgtgtcgatccacgacaagcacatcgag
gtcatcgtgcggcagatgctgcgccgcgtgacgatcatcgactccggtgccacggacttc
ctgccgggcgagctgcccgagcggaccaagttcgaggcgaagaaccgcgcgtcggtcgcc
gaaggcggcgagccggcctcgggtcgcccggtgctgatggggatcacgaaggcctcgctg
accacggactcgtggctgtcggcggcctcgttccaggagaccacgcgtgtcctgaccgac
gcggccatcaacggccgctcggacaagctcgtgggcctcaaggagaacgtgatcatcggt
aagctgatcccggccggtaccgggatcaacaagtaccgcaacatccaggtgcagccgacc
gaggaggcgcgggtcgccgcttacgcgatcccgtcctacgacgacggctactacaccccg
gacgtgttcggctccacgccgggcgccgcggtgccgctggacgactacgacttcggccgc
gacttccgctga
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integrated database retrieval system
