Anneissia japonica (feather star): 117102828
Help
Entry
117102828 CDS
T08613
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ajc
Anneissia japonica (feather star)
Pathway
ajc03013
Nucleocytoplasmic transport
ajc03015
mRNA surveillance pathway
ajc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ajc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117102828
09122 Translation
03013 Nucleocytoplasmic transport
117102828
03015 mRNA surveillance pathway
117102828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajc03019
]
117102828
03041 Spliceosome [BR:
ajc03041
]
117102828
Enzymes [BR:
ajc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117102828
Messenger RNA biogenesis [BR:
ajc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117102828
Spliceosome [BR:
ajc03041
]
Complex C
Other components
EJC/TREX
117102828
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117102828
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117102828
NCBI-ProteinID:
XP_033099145
LinkDB
All DBs
Position
Unknown
AA seq
462 aa
AA seq
DB search
MTRKQPFCKLFVQFGRRSRLCFKSVLLKLLLYYYNKMAENEDVLLDYEEDEPEVAPEAAG
DGPAAKKEVKGTYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVL
CQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAYQIAKEYERFSKYMPSIKVG
VFFGGLHINKDVQALKTNCPHIVVGTPGRTLALGRQKSLALKNVKHFILDECDKMLEQLD
MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDETKLTLHGLQQYY
VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRSMLQEER
LSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL
AVTFVSDETDAKTLNEVQDRFEVNIGELPEEIDMSSYIEATV
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgtaagcagccattttgtaagctatttgttcagtttggacgaagaagtcgcttg
tgttttaaatctgtcttattaaagctattactatattactataataaaatggctgaaaat
gaggatgtacttttggactacgaggaggatgagccagaagtggcaccagaagctgccgga
gatggtcctgcagctaagaaggaagtgaaaggcacctatgtctccatccacagttctggt
ttccgagatttcttactcaagcctgagcttctcagagcaattgttgattgtggttttgag
catccatctgaagtacaacacgagtgcattccgcaggctattcttggtatggatgttctt
tgccaggctaaatctggtatgggaaaaactgcagtctttgtcctggcaacattacaacaa
atagaaccagttgatgggcaggtgtctgtgctcgtcatgtgccacacaagagagttggca
tatcagattgccaaagaatatgaacgtttctccaagtacatgccatcaatcaaagttggt
gtcttcttcggaggcctccacatcaacaaggatgtgcaggctttgaaaacaaattgtcct
cacatagtcgttggaaccccgggtagaacgctggctcttggacgtcagaagtcgcttgct
ttgaagaatgtaaagcattttattttggatgagtgtgacaaaatgttggaacaacttgat
atgcgacgtgatgtgcaagaaatcttcagaatgacaccacatgagaagcaagtgatgatg
ttcagtgcaaccctgagcaaggaaattcgaccggtttgcaagaagtttatgcaagaccct
atggaagtgtatgttgatgatgagaccaaactgacgctacatggccttcagcagtactac
gtgaaattgaaggataatgagaaaaatagaaagctgtttgatcttctggatgttttggaa
ttcaatcaggttgtcatatttgtgaagtcagtgcagcgttgcattgctcttgcacagctg
ctggtggaacagaacttcccagccattgccatccacagatccatgctccaggaagagaga
ttgtctcgttatcagcaatttaaggatttccagaaacgtatccttgtggctacgaacttg
tttggccgtggtatggatattgagcgtgtgaatattgtattcaactacgatatgccagaa
gattcagacacctacttgcatagggttgctcgtgctggacgtttcggtacaaaaggtctt
gctgtcacgtttgtgtccgacgaaacggatgccaaaacattgaacgaggttcaagaccga
tttgaagtgaacattggtgaactgcccgaggagatcgacatgtcttcatacattgaggct
actgtctga
DBGET
integrated database retrieval system
