Anneissia japonica (feather star): 117107473
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Entry
117107473 CDS
T08613
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ajc
Anneissia japonica (feather star)
Pathway
ajc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117107473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajc03019
]
117107473
Enzymes [BR:
ajc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117107473
Messenger RNA biogenesis [BR:
ajc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117107473
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
AHD
Motif
Other DBs
NCBI-GeneID:
117107473
NCBI-ProteinID:
XP_033105063
LinkDB
All DBs
Position
Unknown
AA seq
657 aa
AA seq
DB search
MDVTRKNFKEALGIISNVLNDSSFVSIDGEFTGLHYDSRVIPNAFDTPEERYQKLRQGSM
DFMLVQFGLCIFKYNGKSSKYTVYPFNFYVFPTPLNRHAPDPRFLCQSSSIDFLATHNFD
FNKLFREGIPYLTSNNAHAMREEILQKYAGQGIILPNSPAFRTPPAKGPVIIPDEHKEFI
NNIVSKTEALLKDNDKTSLQLDPCNGFQRKLIYQTMETKFQTKLIVETKTGEKKERYIVI
TKATSEDDKKKRDQLRMQAELDEVEDAVGFSKVIDMISESGRVVVGHNMLFDLLHTLNQF
SCQIPENLLEFKNMSHCVFHRVVDTKVMASTHPFKEFIMSSALGDLHKRLQDNPFIPPTI
EMASNFSGYSEGEMHHEAGYDAYLTGQCFAIMANYLGTFMDPPKQRVSPSSQFLEPFMNK
IHLMRSNDIPYLNLNGPDLQPSRNHVFHVTFPKEWRIGDLHRLFSPFGSIYVAWISDTEA
FVSLYKVAEASAVMKTITKGEDYTVVPYNDYKREIYSSVDTNFEKENKKIDQPQDGKTMT
VADIEKANVDDPGKRKRRISSLEADAEVADLMETKAKKQKPMDPNAAPFVSRKGVKPPLP
GVTEEGDVDVEEAGKGGEDEVKEKDTEEGKVELIKTNFTKEPVEDKDVKMFEEPETW
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcacacgtaaaaatttcaaagaagcattaggaataatatccaatgttttaaat
gacagctcatttgtgtctattgatggagaattcactggtttacactacgacagcagagtt
attccaaatgctttcgacactccagaagaaagataccaaaagttaagacaaggttcaatg
gacttcatgttggtgcagtttggtttgtgcattttcaagtacaatggtaaaagttcaaag
tacacagtttatcctttcaatttctatgtatttccaactcctctcaatcgccatgcacct
gatccaagatttctgtgtcagagttctagcattgactttcttgccacccacaactttgac
ttcaataaacttttccgagaaggaatcccgtatttgacatccaacaatgctcatgccatg
agagaagagatactgcagaaatatgctgggcagggaatcatattaccaaacagccctgct
ttccgaacacctccagctaaaggtcccgtcatcattccagatgagcataaggagttcatc
aataatattgtatcaaaaacagaagctttgttaaaagataatgataaaacatcattacaa
cttgatccgtgcaatggatttcaaagaaagttaatttatcagactatggaaactaagttt
caaacaaaattaatagtagaaacgaaaacaggagagaagaaagaacgctacatagtaatt
acaaaagctacttcagaggatgacaagaagaaacgagaccaacttaggatgcaagcagaa
ttggatgaggtagaagatgctgtcggattttcaaaagtgattgacatgatatcggagtcg
ggacgtgttgtcgttggccacaatatgctttttgaccttctgcacacgctcaatcagttc
agttgccaaatacctgagaatcttttggagttcaagaatatgtcacattgcgtgtttcac
cgtgtggtggatacaaaggttatggcaagtactcatccatttaaggaattcatcatgagt
tcagcactgggtgacttacacaagaggcttcaggacaatcccttcataccacccacaata
gaaatggcatcaaacttcagcgggtacagtgaaggagagatgcaccacgaggcaggttac
gatgcttatcttacgggtcagtgcttcgcaataatggccaattaccttggaaccttcatg
gaccctccaaaacaacgtgtttcaccatcgtctcagtttttggaaccatttatgaacaaa
atccatctgatgcgtagcaatgacattccatacttgaacttaaatggaccagatttacag
ccatcaagaaaccatgtgttccatgtgactttccctaaagaatggcgtataggtgacctt
catcggttgttttccccatttggatccatctacgtcgcctggatcagtgacacggaagca
tttgtctcattgtacaaagtggcagaagcttcagcagttatgaaaaccattaccaaagga
gaggactacacagttgtaccgtacaatgactataaaagagagatttacagcagcgtggat
acaaactttgaaaaagagaacaaaaaaatcgaccaaccgcaagatggtaagacaatgact
gttgcagatattgagaaagcaaacgtggatgatcctgggaagagaaagagacgcatttcc
tccttggaagctgatgccgaggttgctgatttgatggagaccaaggcaaagaaacagaaa
cctatggatccaaacgcagcaccatttgtatcaaggaagggggtaaaacctccattacca
ggtgtcacagaggagggcgatgttgatgttgaagaagctgggaaagggggtgaagatgag
gtgaaagaaaaggacacagaggaaggaaaagttgaactgatcaaaaccaattttaccaaa
gaacctgttgaagataaagatgtgaagatgtttgaagaaccagaaacttggtga
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