Anneissia japonica (feather star): 117114382
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Entry
117114382 CDS
T08613
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ajc
Anneissia japonica (feather star)
Pathway
ajc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117114382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajc03019
]
117114382
03041 Spliceosome [BR:
ajc03041
]
117114382
03009 Ribosome biogenesis [BR:
ajc03009
]
117114382
03016 Transfer RNA biogenesis [BR:
ajc03016
]
117114382
Enzymes [BR:
ajc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117114382
Messenger RNA biogenesis [BR:
ajc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117114382
Spliceosome [BR:
ajc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117114382
Complex C
U4/U6.U5 tri-SnRNP related factors
117114382
Ribosome biogenesis [BR:
ajc03009
]
Eukaryotic type
Pre-60S particles
Helicases
117114382
Transfer RNA biogenesis [BR:
ajc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117114382
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
117114382
NCBI-ProteinID:
XP_033113933
LinkDB
All DBs
Position
Unknown
AA seq
862 aa
AA seq
DB search
MAAFGDDLFSVFEEPAGSSLIEKQNESIEDTSEIECGEKRPLPDPGESEEGSKRVRVGLT
DEDLNLAEILPKVSVHPVEGTIPGCTHEVAVPTDEEYEELKPMAEGYKPAKEYPFILDPF
QKEALKCLENNQSVLVSAHTSAGKTVVAEYAIAMSLRNKQRVIYTTPIKALSNQKYREMF
EEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEIMREVGWVIFDEIHYMRDKERG
VVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPVPLQHYIFPA
GGDGLHLVVDEKGDFRQNNFNAAMSVLRDVGDASKGDMSNRGRKGGTKGPSNIFKIVKMI
MEKSFQPVIIFSFSKKECEVYALQMAKLDFNTPEEKKLVTEVFDNAIDSLSDEDKTLPQV
ENVLPLLKRGIGIHHSGLLPLLKEVIEILFSEGLIKALFATETFAMGLNMPARTVVFTNA
RKYDGKSFRWLTSGEYIQMSGRAGRRGLDDRGIVILMVDEKMSPNIGKNLLQGQPDPLNS
AFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQNYVAIPELIEKLKTLEEDYNSMSVPDEE
NVETYYKIRQQLERLRTEIQAVLTKPKHCLPFMQPGRLVHVKNGDDVFGWGVIINFRKKA
NQKMASPTDDSPLYVGEVLLDVSKESIKNAATESAKPPAEGERGEMTVVPIMLHLITKIS
SVRLYIPKDLRPTDNRQSVGKSIQEVQRRFPDGLPLLDPIDDMGIKDKALKKIVEKVEAF
ESRMVNHSLHKDPKLNEIYSAYEKKAQIGLDIKAAKKELKRVKTVIKMDELKCRKRVLRR
LGYATSADVIELKGRVACEIST
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctttggggacgatctttttagtgtttttgaagaaccggcaggctcatccctt
attgaaaaacaaaatgaaagtattgaagatacttcagagatagaatgtggggagaaacgt
ccacttcctgatccaggagagagtgaagaaggcagtaaacgtgtgcgagttggacttaca
gatgaagacttaaacttggctgaaattttaccaaaggtgtctgtacaccctgttgaagga
acaattcctggctgtactcatgaagtagctgtgcctacagacgaagaatatgaagagttg
aaacctatggcagagggctacaagcctgctaaggaataccctttcattttagatcctttt
cagaaggaagctttgaaatgtcttgagaataatcaatcagttttggtgtcggcccacaca
tctgcaggaaaaacagttgtagcagaatatgccattgccatgtcattaaggaacaaacag
cgtgtaatctacaccacaccaatcaaagctcttagcaaccagaagtatcgagaaatgttt
gaggagttccaagatgtagggctgatgactggtgacgtcaccataaaccccactgctagc
tgtctcatcatgacaacagagattttgaggagcatgttgtacagagggtcagagatcatg
cgagaggtcggctgggtcatttttgacgagatccactacatgcgagacaaagagcgaggt
gttgtgtgggaagaaaccattattcttctgccagacaatgtgcattatgtgttcctgtca
gctacaataccaaatgccagacagtttgcagagtggatctgccaccttcataaacaacct
tgtcatgttgtgtacactgactacagaccagttcctctacagcactacatctttcccgct
ggcggtgatggccttcatcttgttgtagacgagaagggagactttcgtcagaacaacttc
aatgcagctatgtctgttctgcgggatgttggtgatgcatcaaaaggagatatgtctaat
agaggaaggaaaggaggaacaaaaggtccatcaaatattttcaaaattgtaaagatgata
atggagaaaagcttccagcctgtgatcatcttcagtttcagtaagaaagagtgtgaggta
tatgccctacagatggccaagctggacttcaacacaccagaggagaagaagcttgtgaca
gaggtctttgacaatgccattgattccctctctgatgaggacaaaacgcttccccaagtc
gaaaatgtcctccctctgctaaagagaggtatcgggatccatcattccggattactccca
ttgctgaaagaagtgattgagattcttttctcggagggtcttatcaaggcattgtttgcg
actgaaacatttgcaatgggactgaacatgccggcaagaactgtggtcttcaccaatgct
aggaaatatgatggcaaaagttttagatggctgacctcaggtgagtatattcagatgagt
ggtcgtgcaggtaggagaggcttagatgatcgtggtattgtcatcctcatggtagatgag
aagatgagtccaaacattggcaaaaaccttctacagggccaacctgatccactgaacagt
gcgtttcatttgacgtacaacatggtgttgaatttactacgagtggaggagattaatcct
gagtacatgcttgaaaaatctttctaccagttccagaattatgttgcaatacctgaactc
atagaaaaattaaaaaccctggaagaggattacaatagtatgagtgtacccgatgaggag
aacgttgaaacgtattacaaaatacgccagcagctagagagattaagaacagagatacaa
gcagtgttaacaaaacctaagcattgtctcccgttcatgcagcctggtagacttgttcat
gtaaaaaatggtgatgatgtctttggatggggtgtcattattaacttcaggaagaaagcc
aaccagaagatggcttcaccaacggatgactctccactttatgttggtgaggttctcctg
gatgtttcaaaagagagcataaaaaatgctgccacagaatctgctaaaccacctgctgaa
ggtgaaaggggagaaatgactgttgttccaattatgcttcatctgataacgaaaataagc
agtgtaagattgtacatacctaaggatctgagacccacagataataggcagagtgttggc
aaatcaatacaggaggtacagagaagatttccagatggtttaccacttttggacccaatt
gatgatatgggaattaaagacaaagctttgaagaaaatagtagagaaagttgaagcattt
gaaagcagaatggtgaaccattccttacacaaggacccaaaactgaacgaaatatattca
gcttatgaaaagaaagcacagattggtttagatatcaaggcagcaaaaaaagaattgaag
agagttaaaacagtgataaaaatggacgagttgaaatgccggaagagagtgctaaggagg
ctgggctacgcaacttctgcagatgtcattgagctcaaaggaagagtggcgtgtgaaatc
agcacgtaa
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