Anneissia japonica (feather star): 117116456
Help
Entry
117116456 CDS
T08613
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ajc
Anneissia japonica (feather star)
Brite
KEGG Orthology (KO) [BR:
ajc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ajc03016
]
117116456
Enzymes [BR:
ajc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
117116456
Transfer RNA biogenesis [BR:
ajc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117116456
Prokaryotic type
tRNA splicing ligases
117116456
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
117116456
NCBI-ProteinID:
XP_033116392
LinkDB
All DBs
Position
Unknown
AA seq
508 aa
AA seq
DB search
MASRSFNEEMEFLERMSDCCWRIKKGFVPNMQVEGHFYVNKHLETLMLDELRNSCRNQGM
GGFLPGVKQIANVAALPGIVKGSIGLPDLHSGYGFAIGNMAAFDMGNPDSVVSPGGVGFD
INCGVRLIRTNLTEKDVNPVKEQLAQSLFDHIPVGVGSKGVIPMGVKDLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLQADPTKVSTRAKKRGLPQVCTLCFIFCNHYAEIQVVDEI
YDNHTAQKMGIERKGQVCVMVHSGSRGFGHQVATDALVQMEKAMKRDKIIVNDRQLACAR
IHSQEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFHSNPDDLDMHVIYDVSHNIAK
VEEHMVDGEQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTYK
GMQETFGTTCHGAGRALSRAKSRRNIDYQQVLDKLSGQGISIRVASPKLVMEEAPESYKN
VTDVVDTCHAAGISKKAIKLRPIAVIKG
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggccagcagaagcttcaacgaggagatggaatttctcgagaggatgtctgactgttgt
tggaggataaagaaaggatttgtgcctaacatgcaggttgaaggtcacttctatgtcaac
aaacatttagagacattaatgttggatgagcttcgcaactcgtgcagaaatcagggaatg
ggagggtttcttcccggagtgaagcagattgcaaacgtggcagccttgcctggtatcgtt
aaaggatccattggtctacctgatctccactcgggctatggctttgcaataggcaatatg
gctgcctttgacatgggcaacccggattctgtagtgtctccaggcggtgtgggattcgac
atcaactgtggcgtgcgtcttatcagaacaaacttgacggaaaaagatgtcaacccggtt
aaagagcagttagcacagtctctgtttgatcatattcctgtaggggtgggctcaaaaggt
gtaatacctatgggtgtaaaggacctggaagaagctctggaaatgggaatggactggtca
ttacgagaaggctatgcatgggcagaagacaaagaacattgtgaagaatacggacgaatg
cttcaggctgaccccacaaaggtcagcacacgagccaagaaaagaggattaccgcaggtt
tgcacgctatgttttatattctgtaatcattatgctgagattcaagtcgtggatgaaatc
tatgacaaccatacagcacagaagatgggcatcgaacgcaagggacaggtgtgcgtcatg
gtccatagtggtagtcgaggttttggacatcaggtagccacagatgcattagtacaaatg
gagaaggcaatgaaacgtgataagatcattgtaaacgacaggcagcttgcgtgcgcacgt
atccactcacaagaaggtcaggactacttgaaggcgatggccgccgctgcaaactttgca
tgggtaaatcgctcaagcatgacattcctcacaagacaggcatttgcaaagcagtttcac
tcgaatcctgacgatcttgacatgcatgttatctatgatgtttcacataatatcgctaaa
gtggaagaacatatggtagatggtgagcagaagacgttactggtccatcgcaaaggctcc
acgcgtgcattccccccgcatcatcctctaattccagttgattaccagttaacaggacag
ccagtgttgattggaggaacaatgggtacttgcagctatgtattgacaggaacttacaaa
ggcatgcaagaaacctttggcacaacatgccatggagcgggacgtgcattatcacgggcc
aagtcccgacggaatattgactatcagcaggttcttgacaagctctctgggcagggaatc
tcaatcagagttgcatcaccgaagttggtcatggaggaggctccagaatcatacaagaat
gttacagatgtcgtggacacgtgccatgctgccggtatcagcaagaaggcgattaagctt
cgtccgatcgctgtcattaaaggttga
DBGET
integrated database retrieval system
