Anneissia japonica (feather star): 117117610
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Entry
117117610 CDS
T08613
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ajc
Anneissia japonica (feather star)
Pathway
ajc03020
RNA polymerase
ajc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ajc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117117610
09124 Replication and repair
03420 Nucleotide excision repair
117117610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajc03021
]
117117610
03400 DNA repair and recombination proteins [BR:
ajc03400
]
117117610
Enzymes [BR:
ajc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117117610
Transcription machinery [BR:
ajc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117117610
DNA repair and recombination proteins [BR:
ajc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117117610
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
117117610
NCBI-ProteinID:
XP_033117859
LinkDB
All DBs
Position
Unknown
AA seq
1932 aa
AA seq
DB search
MTLQFNDSKAPMREVKRVQFGILGPEEVKRMSVTEGGIKYPETMEAGKPKLNGLMDPRQG
AVDRSARCQTCACNQTECPGHFGHIELAKPVFHASFMTKIIRTLRCCCFFCSKLLVDPEH
PKLKEVIRKSKGQPRKRMTHVYDLCKGKKLCEGGDEMDNQFDATLAERDGEENMEPKPKG
HGGCGRYQPKIRRTGIDLVAEWKHVNEDSQERKINLTAERVHEIFKRISDEEAEILGFSP
QFARPDWMVITVLPVPPLCVRPAVVMFGSARNQDDLTHKLADIIKINNELKRNEQNGAAA
HIIAENAKMLQFHVTTLSDNELPGLPRAMQKSGRPLKSIKQRLKSKEGRIRGNLMGKRVD
FSARTVITPDPNLHIDQVGVPRTIAQTMTYPEIVTPFNIDKLQELVRRGDNQYPGAKYII
RDNGERIDLRYHPKPSDLHLQCGYKVERHMVTGDLVVFNRQPTLHKMSMMGHRVKVLPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLDTKAEISEIMRVPRLIVTPQSNKPVMGIVQD
SLAAVRKFTKRDVFLTKEQVMNLLMWLPTWNGKMPQPAILKPKHLWTGKQMMSLIIPNGI
NLIRTHSTHPDDEDKGPYKWLSPGDTKVLIENGELISGIICKKTLGTSSGSLVHVSFMER
GHEESKLLYGYIQTVVNNWLLLEGHSIGIGDCIADSKTYEDIQNTIKKAKRDVIDVIEKA
HNDDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKVMVVAGSKGSKIN
ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEMFFHA
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMIRYDGTVRNSNDYLVQLRYGEDGLDGGS
VEFQQLATLKPSHKAFEKGYKFDYTNEKLLRKNLNEDIVRDILGNNHAHLELDKEWEQLL
EDRTILREVFPSGESKVALPCNLQRMIWNAKKIFRIDSRKTSDLHPLIVIEGIRKLCKQL
VIVKGEDSISKQAQQNATILFSSLLRSTFSSQKVMQEHHLSSEAFDWLLGEIETRFNHAH
GLPGEMCGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLT
VFLTGAAARDAEKTKDILCRLEHTTLRKVTSNTAIYYDPEPQNTVIEEDQDWVNLYYEMP
DFDPSRISPWLLRIELNRKRMTDKKLSMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKYNDEEEQVDKMDDDVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQMDNKKRI
IITEEGEFKAIQEWILETDGTSLMQVLSDKDVDPVRTTSNDICEIFQVLGIEAVRKAVEK
EMNHVISFDGSYVNYRHLALLCDVMTQRGHLMAITRHGVNRQEVGALMRCSFEETVDILV
EAAAHAEIDFVKGVSENIMLGKLASAGTGCFDLLLDAEKCKYGMEIPIHTMGPGMMPGMP
GMFLGGGHSPSSSMSPQMTPWGSGNTPAYGAWSPAVGSGMTPGGPGFSPSAASDASGISP
AYSPGWSPQPQSPGSPMASPYIPSPGRILSPGYSPSSPAYLPDSPGGVTPQSPGYSPTSP
SYSPTSPSYSPPSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPSSPKYSPTSPSYSPTSPSYGPSSPSYSPTSPSYSPSSPSYSPTSPSYSPS
SPSYSPKSPNYSPTSPSYSPTSPSYSPSSPKYTPTSPNYSPTSPSYSPTSPSYSPASQQY
SPTSPKYSPTSPSYSPTSPKYSPTSPSYSPTSPKYSPSSPTYSPTSPKDSTYSPTSSQTY
SPSSPSYSPDDE
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atgacccttcagttcaacgattcaaaggcgcctatgcgcgaagtgaagagagtgcagttt
ggcattttgggtcctgaagaagttaaacgaatgtcagtgacggaaggtggcatcaaatac
ccagagaccatggaggcaggcaagcctaagctaaatggtttgatggaccccaggcaggga
gctgtcgacagaagtgctcgatgtcagacctgtgcctgtaatcagacggagtgcccagga
cattttggacacatcgagttggctaaaccggtgttccatgcatctttcatgacaaagatt
ataagaactcttcgatgttgctgcttcttttgctctaagctattagtagacccggagcat
ccaaagttaaaagaggtcatcagaaagtctaaaggtcagcctcggaaacgtatgacccat
gtctatgacctttgcaaaggcaagaaactgtgtgaaggcggcgatgagatggacaaccaa
tttgatgccaccttggctgagagagatggggaagagaatatggaaccaaaaccaaagggt
catggtggttgtggacggtaccaaccaaagatccgccgtacaggaattgatttggttgct
gaatggaaacatgtcaacgaagattcacaggagcggaagattaaccttactgcagagcgt
gttcatgagatcttcaagcgcatcagtgatgaagaagctgaaatccttgggttttccccg
cagtttgctcgtccagattggatggtcattactgttttaccggttccacctctgtgtgtg
cgtccagctgtagttatgtttggttctgctagaaatcaggatgatttgactcacaagctg
gctgacatcatcaagattaataacgagttgaaacgtaatgaacagaatggtgctgcggca
cacatcatcgcagaaaatgcaaaaatgttgcaattccatgtcacgactctatcggataat
gagttacccggcctaccacgtgcaatgcaaaaatctggacgaccactcaaatctatcaag
caaagattaaaaagtaaagaaggtcgtatccgtggaaaccttatgggtaagcgtgtagat
ttttctgcacgtaccgtcattacacctgatccaaatcttcacattgatcaagtcggtgtt
ccacgtacaattgcgcaaacaatgacgtatccagagattgtcacaccatttaacattgac
aaactgcaagagcttgtaaggcgaggtgacaatcaatacccaggtgccaagtacatcatt
cgtgacaatggtgaaagaattgacctgcgctatcaccctaaacccagtgatcttcactta
caatgtggatacaaggttgagaggcatatggtgactggtgatttggttgtgttcaaccgt
cagcctactcttcacaaaatgtccatgatggggcatcgtgtcaaggtacttccctggtct
acattcagacttaatctcagtgtgacaacgccatacaatgcagattttgatggagatgag
atgaatttgcatttgccacagtcactagacacaaaagcagagatcagtgagattatgaga
gtacctcgactgatcgtcacacctcagtccaacaaacctgttatgggtattgtacaggat
tcactagctgctgtcaggaagttcacaaagagagatgtcttccttacaaaggaacaagta
atgaatttattgatgtggctgccaacctggaatggaaaaatgccacagcctgcaatatta
aaaccaaaacacctgtggacaggtaaacagatgatgtcgctcattattcccaacggaatc
aacttgattcgtacccacagcacacatcccgatgacgaggacaaaggaccatacaaatgg
ctctctccaggagacacaaaggtcctcattgagaatggtgagctaatctccggtatcatc
tgcaagaagaccctcggaacgtcatctggatctctggttcatgtgtcattcatggagcga
gggcatgaagagtcaaagctcttgtacggctacatccaaactgtagtcaacaactggttg
ctcctggagggtcactccatcggcattggtgattgtattgctgattccaagacctatgag
gacatccagaacaccattaagaaagccaagcgtgatgtcatcgatgtcattgagaaggcg
cataatgatgatctggagccaacacctggtaacactctacgacagacatttgaaaaccag
gtgaacagaattctgaatgatgctcgtgacaagactggcggctcagcccagaagagttta
tcagagttcaacaacttcaaagtgatggtggtggctgggtcaaaaggatcaaagattaac
atctcccaggtcattgcatgtgtgggtcaacagaacgttgaaggtaaacgaatcccgttt
gggttccgacacaggacactgccacatttcatcaaggatgattacggtccagagagtcgt
ggctttgtggagaactcgtacctcgctgggctgacgccatcggagatgttctttcacgct
atgggaggacgtgagggtctgattgatacagctgtgaagactgctgagacaggttatatc
cagcgtcgtttaatcaaagctatggagagcgtgatgatcagatatgatggaaccgtacgc
aacagcaatgactacctcgtgcagttgaggtatggcgaagatggcctagacggtggctct
gttgagttccagcagttggcgacgttaaaaccttcccacaaggcttttgagaaaggatac
aagttcgactatacaaatgagaagctactccgcaaaaaccttaatgaagacatagttcgg
gacattcttggaaacaatcacgcccatcttgaattggacaaagagtgggagcaactcctg
gaagataggacaatcttaagggaagttttcccatctggagaaagcaaggttgcattgcca
tgcaatttacagcgtatgatctggaacgcaaagaaaatcttccgtatcgattcaagaaag
acttcagatcttcatccattgatcgttatcgagggtatccgcaaattgtgcaaacagctt
gtgattgtcaaaggcgaagactccatcagtaagcaggcacagcaaaacgccaccatcctg
ttcagcagtttacttcgttccacattcagcagccagaaagtaatgcaagagcaccacctg
tcatccgaagcatttgattggctgcttggtgaaattgagactcggttcaaccatgcacat
ggtcttcctggagaaatgtgtggagcgctcgcagcccagtcgcttggcgaacctgccact
cagatgacattgaacactttccattatgctggtgtgtccgctaagaacgtcacgcttggt
gtgccccgtcttaaagagatcatcaacatctcaaaaaaaccaaagacgccctcgctcact
gtgtttcttacaggagctgcggcaagagatgcagagaaaaccaaggatattctctgtcgt
cttgaacacacaactcttcggaaagtcacttcaaatacagcaatctactatgaccctgag
ccacagaatacagtgatcgaggaggaccaggactgggtcaacctttactacgagatgcct
gattttgatccatctcgcatttcaccgtggttactacgtattgagctgaaccgtaaacgt
atgaccgataagaagctgtccatggaacaaatcgcggagaaaatcaacgccggatttggc
gatgatctgaattgtattttcaacgacgacaatgctgagaagttagttcttcgaattagg
ataatgaacagtgatgagaataaatacaacgatgaggaagaacaagtagacaagatggat
gacgatgtctttttgagatgtatcgagtcaaatatgttaacagacatgacgctacaggga
atagaacagattgccaaggtgtacatgcatctcccacaaatggacaacaagaaaagaatt
atcatcaccgaagaaggtgaatttaaagcaatacaggagtggatcctggaaacagatggt
accagtttgatgcaggtactaagtgacaaggatgtcgatccggtacgcacaacgtccaat
gacatctgtgagattttccaggtgcttggtattgaagctgtacgtaaagctgtggaaaaa
gaaatgaaccacgtgatctcgtttgatggatcatatgtaaactatcgtcacttggcatta
ctctgtgatgtgatgacccagagaggtcatcttatggctatcactcgtcatggcgtcaac
cgacaggaagttggtgccctcatgaggtgttcatttgaagaaacggttgatattttggtt
gaagcggcagcgcatgctgaaattgactttgtgaaaggggtcagtgaaaacatcatgcta
ggcaagctagccagtgctggcacaggctgcttcgatctgcttttagatgctgagaagtgt
aaatatggaatggaaatacctatacatacaatgggtccaggaatgatgcccggtatgccc
ggcatgttccttggtggcggacactcccccagcagtagtatgtcaccccagatgacacca
tgggggtctgggaatacacccgcgtatggagcttggtcaccagctgttggaagcggcatg
accccaggaggaccaggatttagtccatctgcagcttcggatgccagtggtatcagcccg
gcatatagcccaggctggtcaccacagccgcagtcaccaggctcccccatggctagcccc
tacatcccatctcccggcagaatattatctcctggctattctccatcgtcacctgcttac
ctaccagactcacccggtggcgtaacacctcagagtccaggatactcaccaacctcaccg
tcgtactcgcctaccagcccgagttattcgccgccgagcccaacctactcgccaacaagc
ccgagttactcaccaaccagtcctagttatagtccaactagcccaagctatagcccaact
agccccagttactcaccaactagtccaagttattctccaacttcgccaagttactcaccc
actagtccaagttacagcccaacttctccaagctactcgccgactagtccctcttatagc
ccaacatctccgagttattcgcctacatctccaagctatagcccaacctccccaagttat
agtcctacttcacccagctactccccaacaagtccaagttatagtccaacgagcccgagt
tatagcccaacaagcccaagttattcaccctcatctccaaagtactcgcctacatctcca
agctactcgccgacgagcccgagctacggaccgtcttcaccaagttacagtccaacctca
cccagttacagcccttcttcaccaagttactcgccgacgagcccaagctacagtccgagt
tctccaagttactcgccaaagagccccaattactcgcccactagtccatcatacagccca
acatcacctagctacagtccaagctcacccaagtatacaccgacatctcctaattacagt
ccgactagtccatcttactcgccgactagcccaagttattcacccgcaagccagcaatat
tcaccgacgagccccaagtactcgccaacaagccctagctactcacctactagtccgaaa
tacagcccgacttcgcctagttactcaccaacgagtccaaagtacagtccgagctcccca
acatattcacccacaagtccgaaagattcaacatactctcctacatcatcgcagacctac
tccccttcgtcgccttcctacagtcctgacgacgaataa
DBGET
integrated database retrieval system
