Aeromonas jandaei: I6H43_00005
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Entry
I6H43_00005 CDS
T07712
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ajd
Aeromonas jandaei
Pathway
ajd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6H43_00005 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajd03019
]
I6H43_00005 (rne)
03009 Ribosome biogenesis [BR:
ajd03009
]
I6H43_00005 (rne)
Enzymes [BR:
ajd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I6H43_00005 (rne)
Messenger RNA biogenesis [BR:
ajd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6H43_00005 (rne)
Ribosome biogenesis [BR:
ajd03009
]
Prokaryotic type
rRNA processing factors
I6H43_00005 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
QQB19988
LinkDB
All DBs
Position
complement(join(4550688..4551079,1..2623))
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AA seq
1004 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPEGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQERAAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERA
KAHIELVRPDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHGQVPVDVAAYLLNEKRAAIASLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPKQAQVIEREQPLLQGFAQPTQPAPVAAQQ
QTAPAVAAVPAEAGFFSKLIKGITGLFSSDAAPAEVKAPAEKPAAREARKEEGQRHQREE
GRGRGQRPRRDDNRGNRNNAEAGEKRENGNREGGENRNRRPRKEREPRQEREVRTEQRME
REPREARQEREPRAPRPAREPRAPREPRAEVVVDAVETVDAIEPRQEKEQKVAERRERRQ
LRKQIRVDVAASDTPALPVVEEVQVAAVETGDQDEQAEGQRRSRRTPRSQRIEGQRRKRI
NEEARSQRDEEQQAEPTLTTAAQADIAKAQVEEPVVPVVTIPSAEAVAAALQASAALTEH
VVVEAVAEESAEQVHAVQTEVAATSVVDTVEVEAPVVAVVEATQVEIAQAEQPAEVVAEA
PVAAVEAVEVTEAVTTAPVAEEPVNVVAEETPVAVTKQVKHGAGLLARARKASAPMATPA
AAPALPAREPVDYPPLVRGEVVSSGRHGGSTAAVNVASCPAGRP
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaacgcgactcaagaagaagagttgcgcgtagcgctggttgac
ggacaacagctctacgatttggatattgaaagtccgggacacgagcagaagaaagcgaac
atttacaagggtaagatcacccgcgtagaacccagccttgaagctgcttttgtcgactac
ggcgccgagcgccacggtttcctgccgttgaaggagatcgcccgcaattacttcccctcc
ggttactcctatcagggtcgtcccaacatcaaagaagtggtccgcgaaggtcaggaagtt
atcgtccagatcgacaaggaagagcgtggcaccaagggtgcagccctcaccacctttatc
agcctggcaggtagctacctggtactgatgcccaacaacccccgtgcaggtggtatctcc
cgccgcattgagggtgatgagcggaccgaactgaaagaagccctgagcggattgaccgtg
ccggaaggcatgggtctgatcgtgcgtaccgccggtgtgggcaagtcgccagaagagctg
gagtgggatctgaacgtcctgctcaaccactgggactctatccacaaggcctctcaggag
cgcgctgcgccggtgctgatccaccaggaaagcaacgtcatcgtgcgtgccatccgtgac
tatctgcgtcgcgatgtgggcgagatcctgatcgacaatccggtgattttcgaacgtgcc
aaggcccatatcgagctggtacgtcccgatttcctcaaccgtgtgaagctgtacaagggt
gaagttgccctgttcaaccacttccagattgagagccagattgaatcagccttccagcgt
gaagtgcgcctcccctccggcggcagcatcgttatcgatccgaccgaagccctgacctcc
atcgatatcaactcctcccgcgccaccaagggcggcgatatcgaagagacggcgctgcaa
accaaccttgaagcggccgacgaaattgcccgtcaattgcgtcttcgcgacctgggtggc
ctgatcgtaatcgacttcatcgacatgaccccggttcgccatcagcgcgaagtggaaaac
cgtctgcgtgaagcggttcatcaggatcgtgcccgcatccagctgggccggatctcccgt
ttcggtctgctggagatgtctcgccagcgtctgcgcccctccctcaacgagtccagcagc
catatctgcccccgttgccagggccaaggcgtgatccgtgacaacgaatccctcgccctg
tccatcctgcgtctcatcgaagaagaggccatgaaggacaacaccgagcaggttcacggt
caggtgccggtggatgttgcagcctatctgcttaacgagaagcgtgctgccatcgctagt
ctggaacagcgaaatgatgtgcgtgtttacatcattccgaaccagcatctggaaaccccg
cactacgaagtgacccgcattcgtcagaacgagatcccggaagcggccagctatgagctg
aaaaccgagattgccaagccggtctaccagccgaagcaagctcaggtgatcgagcgtgaa
caaccgctgctgcaaggatttgcccagccgactcaacccgcgccggttgcagctcagcag
cagacagccccggccgttgccgctgtacctgccgaagcaggtttcttcagcaagctgatc
aaaggcattaccggcctgttcagcagcgatgcagcccctgccgaagttaaagcgcccgcc
gagaaaccggctgctcgcgaagcacgcaaggaagagggtcagcgtcatcagcgcgaagaa
ggtcgtggccgtggtcagcgtcctcgtcgtgacgacaaccgtggcaaccgcaacaatgcg
gaagctggcgagaaacgtgaaaatggcaatcgcgaaggtggtgaaaaccgcaatcgtcgt
cctcgtaaagagcgcgagccccgtcaagagcgtgaagttcgtactgaacagcggatggaa
cgtgaaccacgcgaagcgcgtcaagaacgtgagccccgtgctccacgccctgctcgtgag
ccacgcgctccccgtgagcctcgtgccgaggttgtcgttgacgcggtggaaaccgttgat
gccatcgaaccacgtcaggaaaaagagcagaaagtggctgagcgccgcgaacgtcgccag
ctgcgcaagcagatccgcgttgatgttgctgcgagcgacacccctgccctgcctgtcgta
gaagaggttcaggttgcagctgttgagactggcgaccaggatgagcaggccgaaggtcag
cgccgttcccgccgtactccgcgcagccagcgtatcgaaggccaacgtcgcaagcgcatt
aatgaagaagctcgtagccagcgtgatgaagagcaacaagccgagcctactctgactacc
gccgcccaggccgatatcgccaaagcgcaggttgaagagccggtagtgcctgttgtcacc
atcccgagcgctgaagctgtcgcggcagccctgcaagcttctgctgcactgaccgaacac
gtggttgtcgaagctgttgctgaggagtctgctgaacaggttcatgcagtacagaccgaa
gtggccgcaacatctgttgttgacactgttgaagtagaggcccctgtagtcgcagtagtt
gaagcaactcaggttgagattgcacaagctgaacagccggctgaagttgtcgccgaagct
ccggtagccgctgttgaagcagttgaggtcaccgaagctgtaactactgctcctgttgct
gaagagccggtaaacgttgtagctgaagagactcccgtagccgtaaccaaacaggttaag
cacggtgccggtctgttggcccgagctcgcaaggcatctgcgccaatggcgacccctgcc
gcagctcctgccctgccagctcgtgaaccggtggactatccgcctctggttcgtggcgaa
gtggttagctctggccgtcacggtggtagcaccgcagctgtcaatgtggcttcttgcccg
gcaggtcgtccttaa
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