Aeromonas jandaei: I6H43_14315
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Entry
I6H43_14315 CDS
T07712
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ajd
Aeromonas jandaei
Brite
KEGG Orthology (KO) [BR:
ajd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajd03019
]
I6H43_14315 (hrpB)
Enzymes [BR:
ajd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I6H43_14315 (hrpB)
Messenger RNA biogenesis [BR:
ajd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I6H43_14315 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
HA2_N
AAA_22
ResIII
AAA_16
DUF4037
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QQB18729
LinkDB
All DBs
Position
complement(3041603..3044050)
Genome browser
AA seq
815 aa
AA seq
DB search
MSPLPIVSVLPELFAALDRHNSVILQAPPGAGKSTLLPLELVRQNRLPGRIIMLEPRRLA
ARNIASFLARQLGEKVGERIGLRVRGESRTSSATRLEIVTEGVLTRMLQQDPELGGVSLV
IFDEFHERSLHADTALAFAIESQQGLRDDLKLLVMSATLDGMALEKLLPDAPVIRSEGRG
FPIDYHYRPANRQQWLEPQVGAVVLEALAEQAGSLLVFLPGQGEIERLAQWLEGRLPDDV
TLAPLYGRLDMAAQQAAIEPPPAGRRKLVLTTNVAETSLTIEGVSVVIDSGLERRASFDL
KSGVTRLETRPIAKASATQRAGRAGRLGPGVCYRLWSSEVQERLAEQSPPDILTQELTGL
LLDAAQWGAKVEDLPLLDMPPAAAVASAQRLLVALGAMKPEGEQQLTPAGRAMAAFGTHP
RLARMLLRARELEAEGLTGIVADAAYLVALLEEDLRGSERLSVLFHRRQGALRQSAARWF
ERLGARPANPQGQWLGLLCALAWPDRIGKLRSGSRYQLSGGVSCDLSEGHPCQGQSALIA
VEMGQNERGSRIFIAEPIELDELARLLPELVSERQWFDWDEREERVRAERQQVIGELVLS
QRPLTDLSDEQKGRCLLQGIRRKGLHVLPWDESSEGLLARLRCAREWLPDEEWPAMDDDS
LLATLEQWLLPAVSGMTRLEQLKKLDMSDILRQSLPWPLPKRLDEALPGHFTAPTGSRVR
IRYQPGQAPVIPVRIQEMFGQAATPCVADGRVALVVELLSPAQRPLQITADLAAFWAGSY
EQVKKEMKGRYPRHYWPDNPLEAMPTRVTKKKMGM
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
ttgtccccactccccatcgtttcggtgctgcccgaactctttgccgccctcgaccgccac
aacagcgtgatcctgcaggcgccccccggcgcgggcaaatcgaccctgctgccgctggag
ctggtacgccagaaccggctgcccggccgcatcatcatgctggaaccaagacggctggcg
gcgcgcaatatcgccagctttctggcgcgccagctcggggagaaggtgggcgagcgcatc
ggcctgcgggtgcgcggcgagagccgcaccagctccgcgacccggctcgagattgtcacc
gaaggggtgctgacccggatgttgcagcaggatcccgagctcggcggcgtctcgctggtc
atcttcgatgagttccacgaacgcagcctgcacgccgataccgcgctggccttcgccatc
gagagccagcagggattgcgcgatgacctcaagctcctggtgatgtccgccactctggat
ggcatggcactggaaaagttgctgccggatgcgccggtgatccgctcggaagggcgcggc
tttcccatcgactaccactaccgccccgccaatcgccagcagtggctggagccgcaagtc
ggcgccgtggtgctcgaagcgctggccgagcaagctggcagcctgctggtcttcctgccg
ggacagggagagatcgagcggctggcacagtggctggaaggacggctgccggatgatgtg
accctcgcccccctctacggccgcctcgacatggcagcccagcaagcggccatcgagccg
ccacctgcgggccgccgtaagctggtgctcaccaccaatgtggcggagacctctctcacc
atcgaaggcgtctctgtcgtgatcgacagcgggctggagcggcgtgcctcgttcgatctg
aaaagcggcgtcacccgactggagacccgccccatcgccaaagcctccgccacccagagg
gcgggccgtgccggccgcctcggccccggcgtctgctaccggctctggagcagcgaggtg
caggagcggctcgccgagcagagtccgcccgacatcctcactcaggagctgaccggtctg
ctgctggatgctgcccagtggggggcaaaggtggaagatctgccgctgctcgacatgccg
ccggctgccgccgtcgccagcgcccagcggctgctggtcgccctcggcgccatgaagccg
gagggtgagcaacaacttaccccggctggccgcgccatggcggccttcggtacccatccc
cggctcgcccgcatgctgctgcgcgcccgcgagctggaagctgaaggtctgacagggatt
gtcgccgatgccgcatatctggtggcgttgctggaagaagatctgcgaggatcggagcgc
ctctcggtgctgttccaccgccgtcagggagccctgcgccagagtgcggcccgctggttt
gaacggctcggcgctcgcccggccaatccacagggtcagtggctcgggctgctctgcgcc
ctcgcctggccggatcgcatcggcaagctgcgcagcggcagccgttaccagctcagtggc
ggggtgagctgcgatctgagcgagggtcacccctgtcagggtcaaagtgcgttgattgcg
gtggagatgggccagaacgagcgcggcagccgcatctttatcgccgaaccgatagagctg
gatgagctggcgcgtctgctgccggagctggtgagcgagcgccagtggttcgactgggac
gagcgcgaggagcgggtgcgggccgaacgccaacaggtgatcggtgagctggtgctgagc
cagcgaccgctgacagacctttcggatgagcagaaggggcgctgcctgctgcagggcatc
cgccgcaaggggctgcatgtgctgccgtgggacgagagcagcgaagggctgctggcccgt
ctgcgctgcgcccgtgagtggctgcctgatgaggagtggccagccatggatgacgacagc
ctgctggccaccctcgaacagtggctgctgccggcggtgagcggcatgacccggctggag
cagttgaaaaagctcgatatgagcgacatcctgcgccaatctctgccctggccactgccc
aaacggctggacgaggcactgcccggccacttcacggcaccgaccggcagccgggtgcgg
atccgctatcagccgggtcaggcaccggtgatcccggtacgaattcaggagatgttcggt
caggcggcaaccccctgcgtggccgatggccgggtggcgctggtggtagagctgctctcc
cccgcccagcgaccgctgcagatcaccgccgatctggccgctttctgggctggctcctac
gagcaggtgaaaaaagagatgaaggggcgctatccccgccactactggccggacaatccg
ctggaggcgatgccgaccagggtcaccaagaagaagatgggaatgtag
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