Aeromonas jandaei: I6H43_19325
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Entry
I6H43_19325 CDS
T07712
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ajd
Aeromonas jandaei
Pathway
ajd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6H43_19325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajd03019
]
I6H43_19325
Enzymes [BR:
ajd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6H43_19325
Messenger RNA biogenesis [BR:
ajd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6H43_19325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
UvrD-helicase
AAA_22
DRTGG
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QQB19633
UniProt:
A0ABX6ZKM8
LinkDB
All DBs
Position
complement(4077962..4079257)
Genome browser
AA seq
431 aa
AA seq
DB search
MRFEAFDFAPEILRAVSECGYQEMTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPIL
QRLVDTPAAAAPSSTRVLILTPTRELAAQIADNIKAFARYLDLGVITLVGGGKQDVQAKK
LKAGAHIIVATPGRLVEHLTACNLSLSTVECLVLDEADRMLDMGFSADVQQILQAANKGR
QNLLFSATFSEGVKKLANVMLDKPQVVSVNKQNTTADTVSQVVYPVEQKRKRELLSELIG
KQNWQQVLVFASTRESCDELVEELNLDGIKSAVVHGDKAQGSRRRALRDFMEGKVRVLVA
TEVAARGLDIPDLEYVVNYDLPFLAEDYVHRIGRTGRAGKRGQAISFVSREEERTLLEIE
KLIGQKLRRIMVPGYEVSSREMLIKQLEERRRFGGRARRDDNAAAQSMAEAKLQGQRLKR
LAAAKKPRQPK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaagcattcgattttgcccccgagattttgcgcgccgtctcggagtgcggt
tatcaggagatgacccctgtgcagcagcaggcgatcccggccattcgccgtggccgcgac
gtgctggccagcgcccagaccggcaccggcaaaaccgctgcattcgccctgcccatcctg
cagcgtctggtcgatacccctgctgcggcagccccctccagcacccgggtgctgatcctc
accccgacccgcgagctggcagcccagatcgccgacaacatcaaggcgtttgcccgctat
ctggatcttggcgtcatcactctggtgggtggcggcaagcaggatgtgcaggccaagaag
ctcaaagcgggcgctcacatcatcgtggccactccgggccgtctggtcgaacacctcacc
gcctgcaacctcagcctctccaccgtggagtgtctggtgctggatgaagcggatcgcatg
ctcgacatgggctttagcgccgatgtgcagcagatcctgcaagccgccaacaagggccgc
cagaacctgctcttctccgccaccttctccgaaggggtgaagaagctcgccaatgtgatg
ctcgacaagccccaagtggtgagcgtcaacaaacagaacaccaccgccgacaccgtgagc
caggtggtctatccggtcgagcagaagcgcaagcgcgagctgctctccgagctcatcggc
aagcagaactggcagcaggtgctggtctttgccagtacccgcgagagctgcgacgagctg
gtcgaggagctgaacctcgacggcatcaagtcagccgtggtgcatggtgacaaggctcag
ggcagccgtcgccgcgccctgcgcgactttatggagggcaaggtgcgggtgctggtcgcc
accgaagtggccgcccgcggtctggatatcccggatctggagtacgtggtcaactatgac
ctccccttcctcgccgaagattatgtccaccgcatcggccgtaccggtcgtgccggcaag
cgtggtcaggccatctccttcgtcagccgcgaggaggagcgcaccctgctcgagatcgag
aagctgatcggccagaaactgcgtcgcatcatggtgccgggctacgaggtaagcagccgc
gagatgctgatcaagcagctcgaagagcgtcgccgctttggcggtcgtgcccgtcgcgac
gacaacgccgccgcccagtcgatggccgaagccaagctgcaggggcaacgcctcaagcgt
ctggccgccgccaagaagccgcgccagcccaagtaa
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