Aeromonas jandaei: I6H43_20930
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Entry
I6H43_20930 CDS
T07712
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ajd
Aeromonas jandaei
Pathway
ajd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6H43_20930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajd03019
]
I6H43_20930
03400 DNA repair and recombination proteins [BR:
ajd03400
]
I6H43_20930
Enzymes [BR:
ajd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6H43_20930
Messenger RNA biogenesis [BR:
ajd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6H43_20930
DNA repair and recombination proteins [BR:
ajd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I6H43_20930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_22
TniB
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QQB19918
LinkDB
All DBs
Position
complement(4453070..4454983)
Genome browser
AA seq
637 aa
AA seq
DB search
MIPSLLTRHFGFSSLRPGQEAVINRIMAGQSAIAIFPTGSGKSLCYQLPALALPHLTLVI
SPLIALMHDQLAFLKSKGISAATLDSSQSPEESRQVMQQALAGQLKILMISVERLKNERF
RRFIQQVPLSLLVVDEAHCISEWGHNFRPDYLKLPDYRQELQIPQVLLLTATATPAVIDD
MQAKFAIEPQGVVVTGFYRPNLDLSVIPMLPEARSEWLCQTLAHSQGAPTIVYVTLQHTA
EECAEVLARRGINARAYHAGLDAALRSQIQLDFMSSKVDCIVATIAFGMGIDKADIRQVI
HYDLPKSIENYSQEIGRAGRDGQPSRCIVLANQSQLPVLENFVYGDTPDLNAIVQLLGQI
RQSGPEWEFPLLRLSNDTNIRQLPLKTLLVYLEMAGIITPAYSYYADYRFKFVLEKRDIL
ARFNPERRQFLEQLFACAPLARSWCTMDFDALWQSYQGERQRAVAALDYLQQQGWIELES
KQMTEVYRINRHDWEPAAQASALHVLFLQKEQSELARLQAMLDFFTSDECLSHRLARYFA
DEAAPAQCGHCSVCRSEVAVLPPLPLQTMPNDAGIRAWCDPLIAKAGSQDARMLTRFLCG
ITTPLTSKIKARSLAGFGQLAQHPFADVLLAVEQAYA
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgatcccctcccttctgacccgacacttcggtttctccagtctccggcctggccaggag
gcggtcatcaaccggatcatggctggccagagtgctatcgccatcttccccaccggctct
ggcaaatccctctgctatcagctgcccgcccttgccctaccccacctgacgctggtgatc
tcgcccctgattgcgttgatgcacgatcagctcgccttccttaaaagcaaggggatcagc
gccgccactctcgactcgagccagagtccggaagagagccgacaggtgatgcaacaggcg
ctggctggccagctcaagatcctgatgatctcggtggaacgcctcaagaacgagcgcttt
cgccgcttcatccagcaggtgccgctctcgctgctggtcgtcgatgaggcgcactgtatc
tcggagtggggacacaactttcgccccgactacctcaaactaccggactaccgccaagag
ttgcagatcccgcaggtgttgctgctgacagccaccgcgactccagccgttattgacgac
atgcaagccaaattcgccattgaaccgcaaggggtggttgtcaccggcttctaccggccc
aacctcgacttgtccgtcatcccgatgctaccggaggcgcgcagcgaatggctctgtcag
acgctggcacactctcaaggggcaccgaccatcgtctatgtcaccctgcaacatacggca
gaggagtgcgccgaggtgctggccagacgggggatcaacgcccgagcctaccatgccggg
ctcgatgcggcgctgcgcagccagatccagctcgacttcatgagcagcaaggtggattgc
atcgtcgccaccatcgcgtttggcatggggatcgacaaggccgatatccgccaggtgatc
cactatgacctgcccaagtccatcgagaactacagccaggagattggccgcgccgggcga
gatggccagccatcacgctgcattgtgctggccaaccagagccagctgccggtgctggaa
aactttgtctatggcgatacgcccgatctgaacgccattgttcaactcctcggccagatc
cgccaaagcggacccgagtgggagttccccctgctgcgcctctcgaacgataccaatatc
cgccagttgccgcttaaaaccctgctggtctatctggagatggcgggcatcatcaccccg
gcctacagctactacgctgactaccgtttcaaattcgtgctggagaagcgcgacattctt
gcccgcttcaacccggaacgacgtcagtttctggagcagctgttcgcctgcgcgccactg
gcacgcagctggtgcaccatggatttcgatgccctctggcagagttaccaaggagagcgg
caacgggcggtcgctgccctcgactatttgcagcaacagggctggatcgagcttgagagc
aagcagatgaccgaggtctaccggatcaaccgccatgactgggaacccgctgcacaggcc
agcgcactgcacgttctattcctgcaaaaagagcagagcgagctggccagactgcaagcc
atgctcgactttttcacctcggatgagtgcctgagccaccgtctcgcccgttatttcgca
gatgaggcggcgccagcccagtgtggtcactgctcggtttgtcgtagcgaggttgctgta
ctgcctcccctgcccctgcagactatgccaaatgatgcggggatccgcgcctggtgcgat
ccactcatcgccaaggctggctcacaggatgctcgcatgctcacccgctttctgtgcggc
atcaccacgccgctcaccagcaaaatcaaggcaagatcgttggccggcttcggccagcta
gcccaacatccatttgctgacgtgctgctggcggtcgagcaagcctacgcctga
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