Histoplasma mississippiense: HCAG_00406
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Entry
HCAG_00406 CDS
T02229
Name
(RefSeq) eukaryotic initiation factor 4A-12
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
aje
Histoplasma mississippiense
Pathway
aje03013
Nucleocytoplasmic transport
aje03015
mRNA surveillance pathway
aje03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aje00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HCAG_00406
09122 Translation
03013 Nucleocytoplasmic transport
HCAG_00406
03015 mRNA surveillance pathway
HCAG_00406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aje03019
]
HCAG_00406
03041 Spliceosome [BR:
aje03041
]
HCAG_00406
03009 Ribosome biogenesis [BR:
aje03009
]
HCAG_00406
03012 Translation factors [BR:
aje03012
]
HCAG_00406
Enzymes [BR:
aje01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HCAG_00406
Messenger RNA biogenesis [BR:
aje03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
HCAG_00406
mRNA cycle factors
Stress granule specific factors
HCAG_00406
Spliceosome [BR:
aje03041
]
Complex C
Other components
EJC/TREX
HCAG_00406
Ribosome biogenesis [BR:
aje03009
]
Eukaryotic type
90S particles
Helicases
HCAG_00406
Translation factors [BR:
aje03012
]
Eukaryotic type
Initiation factors
eIF-4
HCAG_00406
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
TniB
COG4_N
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
5450501
NCBI-ProteinID:
XP_001543360
UniProt:
A6QSQ0
LinkDB
All DBs
AA seq
450 aa
AA seq
DB search
MADGIDRTAEERMEFTTSKEVTVAPTFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQIC
KGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQALVLSPTRELATQIQSVVMALGDYM
NVQCHACIGGTNVGEDIRKLDHGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELL
NRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQ
YFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQ
KERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGR
KGVAINFVTSEDVRILRDIELYYSTQIDEMPMNGTLFYLRYRPMSRLSLWLTQSNSCRPS
HVTTLSWSTNVEHTFPLLLMNAFSKIQIGI
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggaatcgatagaacggcggaggagaggatggagtttacaacatcaaaggag
gtgactgtcgcgccaacctttgaggatatgcacttgaaggaaaacctgttacgtggaatt
tatgcgtacggatacgaatcgccttcagctgtgcagtctcgcgcaatcgtccaaatctgc
aagggccgcgataccatcgcgcaggcccagtcaggcactggtaaaactgcgacattctca
atcagtattctacaagtcatcgatacagttctgagggaaactcaagcccttgtcttatca
ccaacacgagagcttgccacccaaatccaatccgtggttatggccttgggggactacatg
aatgtccaatgccatgcgtgtatcggcggcactaacgttggtgaggatatccggaagctg
gaccatggccagcatgtcgtttcgggcacccccggccgtgttgccgatatgatccgccgt
cgccacctccgaacccgtcatatcaagatgctggtacttgacgaagctgacgaactgcta
aaccgcgggttccgcgaacaaatctatgatgtttaccgttatcttcctcctgccactcag
gttgtggtcgtttctgcaactctcccctatgatgttctcgacatgaccacaaagttcatg
actgacccagttcgcattcttgtcaagcgtgacgagctgaccctggaagggctcaagcaa
tacttcattgcagtggagaaagaagaatggaaattcgacaccctttgcgacctctacgat
acactcacaatcacccaggccgtgatattctgcaacacgcgacgcaaggtagactggctt
acggataagatgcgcgaagccaactttaccgtctccagtatgcatggcgaaatgccgcaa
aaggagcgtgatagcattatgcaggacttccgtcaaggaaactctcgcgttcttatctcc
actgacgtctgggctcgaggtatcgatgtgcagcaggtatctctagtcatcaactacgat
cttcccagcaatcgtgagaactacatccacagaatcggacgaagtggccgctttggacgg
aagggtgttgctatcaacttcgtcacgagtgaggatgtcagaatcctcagagatatcgag
ttatactactctacccagatcgatgagatgccaatgaacggtacgttattttacctccgt
taccggccgatgtcgcgtttgtccctgtggctaacacaatccaatagttgccgaccttct
cacgtaactacgctatcgtggagcacaaatgtagagcatacctttcctcttttgttgatg
aatgcattttcgaaaatccaaattggcatttga
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