Histoplasma mississippiense: HCAG_00841
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Entry
HCAG_00841 CDS
T02229
Name
(RefSeq) pre-mRNA splicing factor ATP-dependent RNA helicase PRP43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
aje
Histoplasma mississippiense
Pathway
aje03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aje00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HCAG_00841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aje03041
]
HCAG_00841
03009 Ribosome biogenesis [BR:
aje03009
]
HCAG_00841
Enzymes [BR:
aje01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HCAG_00841
Spliceosome [BR:
aje03041
]
Complex A
U2 snRNP components
U2 related factors
HCAG_00841
Complex B
HCAG_00841
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
HCAG_00841
Ribosome biogenesis [BR:
aje03009
]
Eukaryotic type
90S particles
Helicases
HCAG_00841
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SRP54
AAA_19
Flavi_DEAD
YfhO
ResIII
ABC_tran
Motif
Other DBs
NCBI-GeneID:
5449762
NCBI-ProteinID:
XP_001543795
LinkDB
All DBs
AA seq
744 aa
AA seq
DB search
MADHRPDGDSVARAKKRQKTQTADMDPRQNKYLAHWYEDETPANGNATEGSILDRFKRHE
TTAAMAKEAEDSLLNPFNGMNSYTSTQKSQILVFVGETGSGKTTQIPQFVLFDDLPQKRG
KLVACTQPRRVAAMSVAERVAAEMDVKLGEEVGYSIRFEDMTSQKTILKYMTDGMLLREA
MHDHDLTRYSTIILDEAHERTMATDVLMGLLKEVGQRRPDLKLIIMSATLDAQKFQRYFG
DAPLLAVRGRTHPVEIFYTPEPEQDYVEAAIRTVLQIHANEPEGDILLFLTGEEEIEDSV
RKISLEVDEMIREADAGPMKVYPLYGSLPPAQQQRIFDPPPPPRKEGGRPGRKCIVSTNI
AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFR
LYTESAFKKELIEQTYPEILRSNLSSTVLDLKKLGIDDLVHFDLMDPPAPETLMRALEEL
NYLACLNDEGDLTPLGRLASEFPLDPALAVMLISSPEFYCSNEILSITSLLSVPQIFIRP
ASQRKRADEMKNLFAHPDGDHLTLLNAYHAFKGPDAQENPRQWCHDHFLSLRALQSADNV
RQQLQRIMEREEIELVSTPFEDKKYYENIRRALVAGFFMQVAKKESQGRIFTGLSKITNE
PVLLHPSSVLGHEAEWVLYNEFVLTTKNYVRTVTAVKGEWLLEIAPVYYDISSFPKGEIR
SALIRAAERLSRKEKMRADKGKRH
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccatcgccctgacggcgacagtgttgctcgtgcgaaaaagagacagaaaacc
cagaccgcagacatggatcctcgacagaataagtaccttgcgcattggtatgaagacgaa
acgccagcaaatggcaatgctactgagggttcgatccttgaccgatttaagcgccacgaa
acaacagctgctatggctaaagaggcggaggattctttactgaatcctttcaatgggatg
aattcttacacctctacccagaaatcccaaatcctcgtcttcgtcggcgagaccggttca
ggcaagaccacccagatccctcagttcgtgctcttcgacgatcttccgcaaaagcgaggc
aagcttgtagcgtgtacccaaccccggcgagttgccgccatgtcagttgcggagcgagtt
gcagcagagatggatgttaagcttggcgaggaagtcggttacagtattcgctttgaggat
atgacgagtcagaaaaccatcctgaagtatatgacggacggtatgttattgagggaagcg
atgcatgaccacgatcttacacgctacagcaccatcattttggacgaagcccacgagaga
acgatggctaccgatgtgctcatgggtctccttaaagaagtcggtcagcgccgcccagat
ctcaaattaattatcatgtctgccacgttggacgcccagaaattccaacggtactttggt
gatgcgccactcctcgcggtccgtggacgaacccaccctgtcgaaatcttttacacccca
gagccggaacaagattacgtagaggctgcgattcgtaccgttttgcaaattcacgccaat
gaaccggaaggtgatatactcctattcctgaccggggaggaggagatcgaagactctgtg
cgcaaaatatctcttgaggtagatgagatgattcgagaagccgatgcagggcccatgaag
gtataccctctctatgggagcctacctccagcgcaacagcagcgcatttttgaccctccc
ccgccacctcgtaaggaaggaggacgacccggacggaagtgtatcgtgtcgactaacatc
gcagaaacatctcttaccatcgatggtattgtgtatgtggtcgacccaggattttcaaag
cagaaagtttataacccacgcattcgagtcgagtccttgctggtgtcaccaatttctaaa
gcatctgcgcagcagcgggctggccgtgctggtcgtacacgtcccggaaaatgtttcaga
ttgtataccgagagcgcgttcaaaaaggaacttatcgagcagacgtatccagaaattctc
cgttccaacttgtcctcgactgtgttggacctgaagaagcttggaattgacgacctggtt
cacttcgaccttatggatcctcctgcccccgaaactctcatgcgagcgctagaggaatta
aactatctagcttgtttgaatgacgaaggagatcttacgcccctaggtcgccttgcatcc
gaattcccattggacccagctctggcagtgatgttgatcagctctccagaattctactgt
tccaatgagatcctctctattacgtctctcctgtccgttccccaaatattcatccgtcct
gcctcccagcggaaacgcgcagatgaaatgaaaaacctctttgcccaccctgatggtgac
caccttacactcttgaacgcttaccacgctttcaagggtcctgacgcccaagagaacccg
cgacaatggtgccatgatcacttcctttccctccgtgctcttcaatctgccgacaatgtt
cgacagcagctacaacgtatcatggagcgggaagaaatcgaacttgtttctaccccattc
gaagacaagaaatattacgaaaacatccgccgtgctcttgtggctggtttcttcatgcag
gttgccaagaaggagagtcagggaagaatctttacaggactgtcaaagataacaaatgag
cccgtattgctgcaccctagtagtgtcctggggcatgaagcggaatgggtattgtataat
gaatttgttctcacgacaaagaactatgtaagaacagtgactgctgtgaagggggaatgg
cttttggaaattgccccagtttactacgatatatccagtttccccaaaggcgagattcgc
tccgctttaattcgggctgccgaaagactttcccgaaaggagaagatgcgcgcggataaa
ggaaaacgacattaa
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integrated database retrieval system
