KEGG   Histoplasma mississippiense: HCAG_02641
Entry
HCAG_02641        CDS       T02229                                 
Name
(RefSeq) pre-mRNA splicing factor syf-1
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
aje  Histoplasma mississippiense
Pathway
aje03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aje00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    HCAG_02641
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aje03019]
    HCAG_02641
   03041 Spliceosome [BR:aje03041]
    HCAG_02641
Messenger RNA biogenesis [BR:aje03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     HCAG_02641
Spliceosome [BR:aje03041]
 Complex B
  Other components
   Prp19-related factors
    HCAG_02641
 Complex C
    HCAG_02641
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf TPR_8 TPR_15 Mad3_BUB1_I NRDE-2
Other DBs
NCBI-GeneID: 5449344
NCBI-ProteinID: XP_001542470
UniProt: A6QZ34
LinkDB
AA seq 831 aa
MDLNFANPFKGNDDTVYEQDILRDPHSITPWLSYIEFKHQQGNSYEQAFVMERACRQLPR
SYKLWKMYLEFRMKHLRGRNPSIHRAEYLKVNGLFERAVILLNKMPRIWEMFLTFLLQQP
MITHTRRTFDRALRALPVTQHNRIWKLYKAFAYSASGDTAIKIWRRYMQVHPENAEEYID
ILVEMGKYTEAVKKYMEILDNPIFQSKNGKSQFQLWTDMAELLVNKAKDIEVGPEIGIDV
DLIIRSGIDRFADQRGKLWAGLATYWITRGNFEKARDIFEEGITTVMTVRDFTLVFDAYV
EFEESIIGHLMEEAALRSDQGKVDEAADFDLDLRMLRFEQLMDRRPFLVNDVLLRQNPNN
VIEWSKRVALWGDNKAEIVQTYTKAIATIHPKKAHGKFHELWVNYAKFYEQGGDLDTARV
IMDKAVKVPFKTVAELAETWCEWAEMELRSENFDRAVDIMAKATQAPKRSTVDYFDETLS
PQQRIHKSWKLWSFYVDLVESVGTLEETKKVYERIFELRIATPQTVVNYANLLEENNYFE
ESFKIYERGLDLFSYPVAFELWNLYLTKAVDRKISIERLRDLFEQAVDGCPPQFAKPLYL
MYGNLEEERGLARHAMRIYERATRAVADSDRFEMFNFYITKSASNFGLTSTRPIYERAIT
ALPDNEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDPRTNAGFWQKWEAFEVQHGNE
DTFKEMLRIKRSVQAQYNTDVNFIASQAIARSKQLVKDAAGAEEEGQDRADAMAALERQA
RAPMGFVPASTGPEGGNRPLPTNGNKQQEQQQQVPANPDAIDLDEDMNGEG
NT seq 2496 nt   +upstreamnt  +downstreamnt
atggatctgaattttgctaatccttttaaggggaatgatgatactgtctatgaacaagac
attctgcgcgacccgcacagcattacgccctggctgtcttatattgaattcaagcaccag
caaggcaattcctatgaacaagcctttgtcatggaacgggcttgcaggcaactgcccagg
tcatataaattgtggaaaatgtatcttgaattccgtatgaagcacctcagaggtcggaat
ccatcgattcatcgagcggaatatctcaaagtcaatggcctattcgaacgcgctgtcatc
ctcctcaataagatgccgcgaatatgggagatgtttctcacatttctacttcagcagcca
atgatcacacacacccgccggactttcgatagggcactacgcgcgctaccagttactcag
cataatcggatttggaagctttacaaggccttcgcttactcagcgtctggagacactgcg
ataaaaatctggcgtaggtacatgcaagtccatcccgagaacgccgaagaatatatcgat
atcttggttgagatgggtaaatacaccgaagccgtgaagaagtacatggaaattctagat
aatcctatatttcagtcgaagaacgggaaaagccagtttcaattgtggactgatatggct
gagctacttgtcaacaaagcaaaggatattgaagtcggccctgagattggtattgatgtc
gatttgatcattcgcagtggaatcgatagattcgctgaccagaggggaaagctatgggct
ggcttggctacctattggattacccgcggaaatttcgaaaaggcgagagatattttcgag
gaagggatcacaaccgttatgactgttcgggattttactctggtattcgatgcctatgtg
gaatttgaagaatctatcataggacatctgatggaggaggcagctttacgatctgaccag
ggaaaagttgatgaggccgccgatttcgatctagaccttcgaatgctgagatttgaacaa
ctcatggatcgccgacctttcctcgtcaacgatgtgcttctcagacagaatcccaacaat
gtgatcgaatggagtaaacgtgtagcgctgtggggtgataataaagccgaaattgttcaa
acatacacgaaggccattgcaactatccatcctaagaaagcccatggcaagttccacgag
ctttgggttaactatgcgaaattttatgaacagggtggagatctcgatacagctagggta
attatggacaaggccgtcaaggtgcctttcaaaacggtggccgaactggctgaaacatgg
tgcgagtgggctgagatggaattgcgcagcgaaaactttgacagagccgtggacatcatg
gcaaaagcgacacaggctccaaagcgatctacggtagactactttgatgaaactctctca
ccccaacaacggatccacaagagctggaagttgtggagtttttatgtcgaccttgtcgaa
agcgttgggactctcgaagaaacgaagaaagtgtatgaacgtattttcgaactgcgaatt
gcaacaccacaaacggtcgttaattatgcgaacctcttggaagaaaataattacttcgag
gagtcttttaaaatttacgagcggggccttgacctcttcagctaccccgttgccttcgaa
ttgtggaatctatatttaaccaaggctgtggatcgcaaaatctcaatcgaacgattacga
gacttgttcgaacaagccgttgacggatgcccaccccagtttgcgaagcctctctacttg
atgtatggcaatctagaagaagaaagagggcttgctcgacacgccatgagaatatacgaa
cgcgcaactcgtgcggtcgctgactccgacagatttgaaatgttcaacttctacatcacg
aaatcggcctccaacttcggattgacatcaacgcgccctatctacgagcgcgccatcaca
gcgttgccggacaacgaggcaaaggaaatgtgcctcaaatttgctgagatggagcgtcgt
ctgggtgagattgatagagctcgtgccatttacggccatgcatctcagttctgtgatccg
cgtaccaatgccgggttctggcaaaaatgggaggcgttcgaagttcagcatggcaacgaa
gatacatttaaggaaatgttgcgcatcaaacgaagtgtccaggcccagtacaataccgac
gtcaacttcattgcttcacaagccattgctcgtagcaagcaacttgtcaaagacgctgcg
ggggctgaagaggagggccaagaccgtgctgatgcgatggcagcgttggaaagacaagct
cgagcacccatgggttttgttcccgcaagcaccggaccggaaggaggaaacaggccattg
cctactaatggtaacaaacaacaagaacaacagcagcaagttcctgcaaaccctgatgct
attgatctcgatgaagacatgaatggagaaggttaa

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