KEGG   Histoplasma mississippiense: HCAG_05061
Entry
HCAG_05061        CDS       T02229                                 
Name
(RefSeq) ATP-dependent RNA helicase SUB2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
aje  Histoplasma mississippiense
Pathway
aje03013  Nucleocytoplasmic transport
aje03015  mRNA surveillance pathway
aje03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aje00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    HCAG_05061
  09122 Translation
   03013 Nucleocytoplasmic transport
    HCAG_05061
   03015 mRNA surveillance pathway
    HCAG_05061
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aje03019]
    HCAG_05061
   03041 Spliceosome [BR:aje03041]
    HCAG_05061
Enzymes [BR:aje01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     HCAG_05061
Messenger RNA biogenesis [BR:aje03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     HCAG_05061
Spliceosome [BR:aje03041]
 Complex C
  Other components
   EJC/TREX
    HCAG_05061
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    HCAG_05061
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1 Ned1_M
Other DBs
NCBI-GeneID: 5446516
NCBI-ProteinID: XP_001539594
UniProt: A6R603
LinkDB
AA seq 484 aa
MSHEEDLIDYSDEELQATDAAAGTAAAGANGAAPKKEGDLTVSGARADKKGSYVGIHSTG
FRDFLLKGELLRAITDCGFEHPSEGFFMSVSALGTAARRKRGYSINGWQYSAAWHNYLSI
SVIFGKGNQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRE
LAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSIVVGTPGRLNALVRD
KKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEVRPICKKF
MRNPLEVYVDDDTKLTLHGLLQYYIKLGESEKNRKLNELLDSLEFNQVIIFVKSTQRASE
LDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINY
DLPADADSYLHRVGRAGRFGTKGLAISFVSSEQDQEVLKDIEKRFEVALPEYPQGGVDSS
AYMA
NT seq 1455 nt   +upstreamnt  +downstreamnt
atgtctcacgaggaagatctcatcgattactcggatgaggagcttcaggcaactgatgct
gccgctggcactgctgccgctggagctaacggcgctgctcctaaaaaagaaggcgacttg
acagtctctggcgcgcgtgcggataaaaaaggcagctatgttggtattcactcgactggt
ttccgcgatttcctcctgaagggggagcttttgcgtgcgatcaccgattgcggtttcgag
catccatcggaggggtttttcatgtcagtcagcgcactcgggactgctgctcgtcgcaag
cggggctattcaatcaacggttggcaatattctgccgcgtggcataactatctgtcaatc
tcggtcattttcggtaaaggaaatcaagtttgcatcccgactgccattctgaatgtcgat
gtcctctgccaggccaaatccggtcttggaaaaaccgctgtctttgtcctgacgactctc
caccagctggagccagttcctggcgaatgctcgatacttgttatgtgccacaccagagag
ctggcatatcagatcaagaacgaatatgcccgatttagcaaatatcttccagatgttaag
actgccgttttctatggtggaactccaatgcaaaaagatatcgagctgctgtcgtcgaaa
gacacatatcctagcatcgttgttggcacccctggtcgattgaatgctctcgttcgcgat
aagaaactgtctctccgaaacatcaaagcgtttgttctcgacgagtgtgataagatgttg
gatcagatcgatatgcgacgcgacgtccaggagatcttccgtgcgactcccgccgacaaa
caagtcatgatgttcagcgccactctctcccaggaagtccggccgatctgcaagaagttc
atgcgcaatcccttggaagtgtatgttgatgatgacacgaagctgactcttcacggcctc
ctccaatactacattaagcttggcgaatcggagaaaaatcgaaagttgaatgaactgtta
gacagcctagaatttaaccaagttatcatcttcgttaagagcactcagcgtgctagcgag
ttagacaagctcctccgtgaatgcaactttcccagtatcgcagtccactccggagtttcg
caggaagagcgtatcaaacgatacaaggaattcaaggaattcaacaagcgaatttgcgta
gcaaccgacgtttttggccgcggcattgatattgaacgaatcaacctagccatcaactat
gacttgcctgcggacgctgattcctaccttcaccgtgtcggtcgggcgggtcgcttcggt
accaagggtctcgcgatctcttttgtcagcagcgaacaagaccaagaggttctcaaggac
atcgagaagcgattcgaagttgctcttcctgaatacccccagggaggtgtcgactccagc
gcctacatggcataa

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