Histoplasma mississippiense: HCAG_05461
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Entry
HCAG_05461 CDS
T02229
Name
(RefSeq) exosome component 3'-5' exonuclease
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
aje
Histoplasma mississippiense
Pathway
aje03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aje00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCAG_05461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aje03019
]
HCAG_05461
Messenger RNA biogenesis [BR:
aje03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
HCAG_05461
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
HD-ZIP_N
Motif
Other DBs
NCBI-GeneID:
5446221
NCBI-ProteinID:
XP_001539994
LinkDB
All DBs
AA seq
807 aa
AA seq
DB search
MEIAADFASFEEEAKTALVKTIRSATQISSEDLNFLRSFDNNVSASIDEESVRLLNLSNS
ILKVATSGSDLQIPELHNEDGVEENWRAIVDVIDELLEKADACLDEFTGIIKRLSPSQAE
RDVVLGKKTASANFPSVYDFGPSKIPKPQLLFNSRPNNKDDGTPFRPLLRTKPHAITPLS
TSASETSPNGTITSYKHPYETEIRNSTYPSSVYTISVPGKFAPFETTTATFVDTLEGIHS
MLAELKEVTEIAIDLEHHDAHSYHGLVCLMQLSTRDKDWIVDTLKPWREELQVLNEVFSD
PKILKVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNYPKKSLKFLLEKFVNFQAEKK
YQIADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNDLIEHSTPSNNLIDYVLERSKQEAL
QRYERPVYNAETGEGRIGWRDMLVRNSTLFSREQFAVFRAVHQWRDKIARFEDEGVQYVL
SKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRARASELVQVIKKAKIIGATGPELRDVLFP
LKQRTDESNPSTPKLSPKSEPDHRSVLVARADISQFWGATLKQPQQPPIPVSHSLAATAE
AFLLSLPLPSIPPKISENLVKETPALAQPNIPRPTATTTNEIFTIKQFGAPGKRKISPAM
EREATDDTPEPIARTIAMTTEPRNKFLQMDDSVSVSSPTSVSSTMETKAQKHQEKKQKKQ
KGVSTPRQRGNNSDTEESPNFTPFDYSNAESVLHANTAEIWNNTNGSFRGNQKPKRQFNP
YAKAMDAPQGMRKSKNEIEGKSFTFRR
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgcggcggactttgcttcgttcgaggaggaggcaaaaactgcccttgtcaag
acgatcagatccgcgacgcagatatcctccgaagacctgaatttcctccgttcgtttgat
aataatgtatcagcatccatcgacgaagaaagcgtgcgcctcctcaatttatccaattcc
attttgaaggttgcgacgtcgggatctgacttgcagatccccgaactacacaacgaggat
ggagtggaagaaaactggagagcgattgtggatgtcattgatgagctgttggaaaaggca
gatgcctgtctggacgaatttacgggtatcataaaaaggctcagtccttctcaagcagaa
cgcgacgtcgtacttggcaaaaagaccgcaagtgccaatttccccagcgtatacgacttc
ggcccatccaagattcccaagcctcagcttttgttcaattctcgtccaaataacaaagac
gatggtacccctttcagaccactgcttcgtactaaaccccatgcgataactccattgtcg
accagcgcgagtgaaactagccctaatgggaccatcacctcctacaagcatccatacgaa
accgaaatacgcaactccacctatccttcatcggtatatactatctccgttcctggtaaa
ttcgcaccttttgagaccaccaccgccacttttgtggacactctggaaggcatccactca
atgcttgcagagctcaaagaagtgacggaaatagctattgatttagaacatcatgatgct
cattcataccatggtcttgtatgtctcatgcaacttagcacacgcgataaggattggatt
gtcgacacattgaagccatggcgggaggagcttcaggtcctgaatgaggtattttcagac
ccgaagatcttgaaagtactccacggttcaactatggatgtgatatggctccaacgtgac
ttgggtctttacatcgtcggtctctttgacacataccatgctgcggtggccctgaattac
ccaaagaaaagtttgaaattccttctggaaaaattcgtgaacttccaagcggagaaaaag
tatcagatcgccgactggagactacgcccacttctccccggcatgtttgattacgcacga
tccgatacccactatcttctgtatatctatgaccatatccggaatgaccttatagaacat
tccactccttcaaacaacttgatagattatgtccttgaaaggtctaaacaggaagcttta
caacgatatgagcgtcccgtttataatgccgagacaggcgaagggagaatcggctggcgt
gatatgcttgttcgtaattccactctcttcagtcgagagcagtttgccgtcttcagggcc
gtccaccagtggcgagataaaattgcgcggtttgaggatgaaggggtccaatatgttctt
tccaaacaatcgttattcaaaattgcccatgcgatgcctttagaccccgtttcgttactg
agaaccgtctcccctgtgtctcctctggtcagagcccgagcttccgaactagttcaagtt
atcaagaaagcaaagattattggagcaaccgggccagagctccgagatgtgcttttccca
ctgaaacaaaggacagatgaatccaacccgagtacacccaaattgtcgcctaagagtgaa
ccagaccaccgatcagttttagtcgctagagcagacatatcccaattttggggcgccacc
cttaaacagccacaacaacctcccattcctgtttcgcactctttggcagccacagcggag
gcattcctgctgtcccttcccctgccctctataccgccgaaaatatcagaaaacctggtt
aaagagacacccgctttagcacagccgaatattcccagacctactgctactaccacaaac
gaaattttcacaattaaacaattcggggctccggggaaaaggaaaatcagcccagcaatg
gaaagggaagcaaccgacgacacacctgaaccaatagcaagaacaatagcaatgaccacg
gaaccgcgcaataaattcctacaaatggacgactctgtgtcagtgtccagtccaacgtcg
gtttcaagtactatggaaaccaaagcacagaagcatcaggagaaaaagcagaagaagcag
aaaggggtatctactcctcggcaacgaggtaacaatagtgataccgaggaatctcccaac
ttcacaccctttgactacagcaacgctgagtccgtccttcatgcaaataccgcggagatt
tggaacaacactaacgggtcttttcgcggcaaccaaaaaccaaaacgacaattcaacccg
tatgccaaagcgatggatgcgcctcaagggatgcgaaaatcgaagaatgaaattgagggt
aaatctttcacattccggcgatga
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