Histoplasma mississippiense: HCAG_05592
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Entry
HCAG_05592 CDS
T02229
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aje
Histoplasma mississippiense
Pathway
aje03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aje00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCAG_05592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aje03019
]
HCAG_05592
03041 Spliceosome [BR:
aje03041
]
HCAG_05592
03009 Ribosome biogenesis [BR:
aje03009
]
HCAG_05592
03016 Transfer RNA biogenesis [BR:
aje03016
]
HCAG_05592
Enzymes [BR:
aje01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HCAG_05592
Messenger RNA biogenesis [BR:
aje03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
HCAG_05592
Spliceosome [BR:
aje03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
HCAG_05592
Complex C
U4/U6.U5 tri-SnRNP related factors
HCAG_05592
Ribosome biogenesis [BR:
aje03009
]
Eukaryotic type
Pre-60S particles
Helicases
HCAG_05592
Transfer RNA biogenesis [BR:
aje03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
HCAG_05592
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ECT2_PH
JHD1_C
AAA_16
Motif
Other DBs
NCBI-GeneID:
5446429
NCBI-ProteinID:
XP_001540125
LinkDB
All DBs
AA seq
1081 aa
AA seq
DB search
MDDLFDVFEEKPPTGLPLQDHSKPRTKKEKNRKRQANGVMKDRPNAVGGQENGQVVDTLM
EDMDMVEPTESQNSEPDPKRQRLQPEPEPVVADTFETEQSREIAGSAGLQGTQDTKAVVL
SHQVRHQVALPPDYPYIPISEHKPPQTPARTWSFTLDPFQQVSIASIERGESVLVSAHTS
AGKTVVAEYAIAQSLRNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINPTATC
LVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSA
TIPNAMQFAEWITKMHNQPCHVVYTDFRPTPLQHYFFPAGADGIHLVVDEKGVFREENFH
KAMETIAEKQGDDPANVMAKRKGKGKDKKTNKGGESNKGPSDIYKIVKMIMLKNYNPVIV
FSFSKRECEAFALQMSKMAFNDESEKEMVSKVFNSAIEMLSDEDKELPQIKHILPLLRLG
IGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRW
ITPSEFVQMSGRAGRRGLDDRGIVIMMINEEMDPTVAKEIVRGEQDKLNSAFYLGYNMIL
NLLRVEGISPEFMLERCFYQFQNAASVAGLERELAELENEYAVMTIPDEGTIREYYELRQ
NIATYTSDMRSVISLPNYCVRYIQPGRLVQIQYMDYDFGWGAVVSCQKRKPPRNAPNEEY
PPHESFIVDVLLQVAEGSSSPTRAGQQPLPPGIRPSQPEGKSKLEVIPVLLSCLKTISHL
RIRLPQDLKPISARSEVKKHIVEIQRRFPDGIPLLDPIEDMGIKDDSFRKLLRKIEVLES
RLMSNPLHNSPRLPELYDQYAAKTELGSKIKATKKKIAEAMSIIQLDELKCRKRVLRRFQ
FINEAEVVQLKARVACEISSGDELMLSELLFNGFFNNLTPEQCAAVLSVFVFEESSKETP
PISKEELAKPLRDIQAQARIIAKVSQESKLAVNEDEYVKGFRWELMEVIYEWAKGKSFAE
ICKMTDVYEGSLIRTFRRLEECMRQMAQAAKVMGSEDLEKKFEKSLEMVKRDIVAAQSLY
L
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atggacgacttgttcgatgtgttcgaggagaaacctcccactggacttcctcttcaagat
cattccaagcctcgaacaaagaaggaaaagaacagaaagagacaggcaaatggcgttatg
aaggatcgtccgaatgcggtgggtggccaggagaatggacaggttgttgataccctaatg
gaggatatggatatggtggaaccaaccgagtcgcaaaatagcgaacccgatccaaaacgg
cagcgcctccagccagagccagaaccggtcgtggccgatacattcgagacggagcagtcg
cgagagattgcaggctctgctggtcttcaaggaacacaagatacgaaagctgttgttcta
tcacatcaagttcgacatcaagttgcgctgcctccagattatccatatattccaatatcg
gaacacaaaccaccacaaacacccgcaagaacatggagctttactcttgatcccttccaa
caggtgtcaattgcgtcaatcgaaaggggggaaagtgttctggtatccgctcatactagt
gctggaaagacggtggttgcagaatatgctattgcgcaaagtctgagaaataaccagaga
gttatctatacaagccctataaaggcgctgagcaaccagaaataccgagaattcgcagct
gaattcggtgatgttggattaatgaccggtgatgttaccataaaccctacggcgacatgc
cttgtcatgacgactgagattttgcgatccatgttatacaggggctcagaaatcatgcgc
gaagtggcttgggtggttttcgatgagatacactacatgcgagacaagactcgtggtgtt
gtatgggaagaaaccattattcttctcccagacaaagttagatatgttttcctctccgca
acaattccgaatgcgatgcaatttgcggaatggattaccaaaatgcacaaccagccgtgc
cacgtcgtctacactgatttccggccaacacccttacaacattattttttccctgctggc
gccgatggaatccatcttgttgttgacgagaaaggagtgttccgtgaggagaatttccac
aaagccatggagaccatcgctgagaaacaaggagatgatccagcaaacgtgatggctaag
aggaaaggcaaaggaaaagacaagaagacgaataagggaggagagagcaataagggccca
tctgatatttacaaaatcgtgaagatgattatgctgaaaaactataacccggtcatcgtt
ttcagtttcagcaagagggagtgcgaagcctttgcactacagatgagcaagatggcattt
aacgatgaatcggagaaggagatggtcagcaaggtgttcaatagtgctattgagatgctc
tccgatgaggacaaggagctgccgcagattaaacacattctaccattgcttcgtctcggg
atcggggttcatcactctggccttctccccattctcaaagaaactatcgaaattctcttc
caggaagggttgattaaggtgcttttcgccacagagacgttctccatcggtctaaacatg
cctgcaaagacagtggttttcacaagtgttcggaaattcgatggagtaagtcagcgctgg
attactccgtctgagtttgtgcaaatgtccggccgtgctggacgtagaggccttgatgat
cgcggtattgtcattatgatgatcaatgaggaaatggatccaaccgttgctaaggaaatc
gtccgtggggagcaagacaaacttaactcggctttttatttgggatataacatgatattg
aacctgctacgtgtggagggaatatcgccagagtttatgttagagcgatgcttttatcaa
ttccaaaatgcggctagtgtagcgggattggaaagagaattggctgagttggagaatgaa
tatgctgtgatgacaattcccgatgaggggacgatccgggaatattatgagctacgccaa
aacatcgccacgtacacctctgatatgcgtagcgttatcagccttccaaactattgtgta
cggtacattcagccagggcggcttgttcaaatacaatacatggattatgatttcggctgg
ggagctgttgtcagctgtcaaaagagaaaaccccctcgaaacgcgccaaatgaagaatat
cctccacatgaaagttttattgtcgatgtcttgctacaagtcgcagagggctcgtcttcc
ccaacgagagctggccaacaacctcttccccctgggatccggccttcccagccggagggg
aaatccaagttagaagttataccagtgcttctcagttgtttaaaaaccatctcccatctt
cggattcgattgcctcaagaccttaagccaatcagcgcgaggagtgaggttaaaaaacac
attgtggagatccaacggcgattcccggatggaattccccttttggacccaattgaagac
atgggaataaaggatgattctttcagaaaactccttcggaaaattgaggtattggaatca
cgtctaatgtccaatccacttcataactccccgcgacttccagaattatatgaccaatac
gcggcaaaaaccgaacttggatccaaaatcaaagcaacaaaaaagaagattgcggaagcc
atgtcgattattcaattagacgagctaaaatgtcggaaacgggtgcttcgtcgcttccag
ttcatcaacgaggcagaagttgtgcaattgaaagctcgcgtcgcatgtgagatcagtagc
ggcgacgagctaatgctgagcgagctgcttttcaatgggtttttcaataacctcacaccc
gaacagtgtgctgcagttcttagcgtgtttgtctttgaggagagttccaaggagacaccg
ccgatttccaaggaagagctcgcgaagccactgagagatatccaggcgcaggccaggatt
attgccaaggtgtcgcaggagtccaaactggcggtcaatgaggacgaatatgtgaaagga
ttccgatgggagttgatggaggtcatttatgaatgggcgaaggggaagtcatttgcggaa
atttgcaaaatgacggatgtttacgagggaagcttgatccggacattccgtcgactggag
gagtgtatgcggcaaatggcccaggcagcgaaagttatgggcagcgaagatttggagaag
aagttcgagaagtctctcgagatggtgaagcgggatattgttgcggcacaatctctctat
ctctag
DBGET
integrated database retrieval system
