KEGG   Histoplasma mississippiense: HCAG_06068
Entry
HCAG_06068        CDS       T02229                                 
Name
(RefSeq) hypothetical protein
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
aje  Histoplasma mississippiense
Pathway
aje03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aje00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HCAG_06068
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aje03019]
    HCAG_06068
Enzymes [BR:aje01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     HCAG_06068
Messenger RNA biogenesis [BR:aje03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     HCAG_06068
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     HCAG_06068
SSDB
Motif
Pfam: Exo_endo_phos LRR_4 LRR_8 LRR_14 LRR_1 LRR_LRWD1
Other DBs
NCBI-GeneID: 5444992
NCBI-ProteinID: XP_001538463
LinkDB
AA seq 769 aa
MADGTYRFQQPVAGQFYFQQQTQQHNHTNAHQRQLVRNGTGSPTGRLKFNTDTPSPSRSP
PLNQSPGHNPYNMYSQGQHVMMNGGQTHQRFGMPMQKFQHPSHHPHHSQQHPHHQHPHSQ
ATHTAIGHQPNFSSGALSSTAPHFTPTHIPNGTTTNVDEEVEEPMNEHWQQQLQLAAESR
QANSPHYYARAVAQQTKGIQLTTSPAETNENGSEERSRSKTTKDPFKRQDWMALDFGGQG
LRAISTPLFDYVFLEKLYLNHNKLKALPPNIGKLKGLTHLDVSGNELTELPEEIGMLINL
KKLLLFDNNIHSLPYEMGYLYQLDTLGVEGNPLNEVFKSRIMQEGTKALITYLKEEMPVH
LPPSERDWIVLDDSDRNPTKGQREKFTALSYNTLCDRSATHQQHGYAPSRALAWEYRRDL
ILNEIKGYNADIVCLQEIDQGSYHGFFREQLAYNDYKGVYWPKGRAQGMPEEEAKVVDGC
ATFFKGSKYILLEKNMIHFGQTAVRRPDAKGQDDIYNRLWQKDNIAVVTYLENRLSGERL
IVVNVHLYWDPAYKDVKLIQAAILMEEVTQLAEKYSKIPACTDKTAFRFSEPEHSTDGGG
TATPVEPAPSVEYSSGSQIPLIICGDFNSYPGSAVHELMSRGRLIEDHPDLEKRLYGNLS
RVGMSYPFNLKSAYGAIGELDFTNYTPDFADVIDYIWYTSNALQVTGLLGAVDKEYLQRV
PGFPNYHFPSDHLALMAEFSFKSKKGKVVEVDFGPQRDRDRDRDRDRAT
NT seq 2310 nt   +upstreamnt  +downstreamnt
atggcagatggtacctaccggttccagcagcctgtggccgggcagttctacttccagcaa
caaacacagcagcacaaccacaccaacgcacaccaaagacaactcgtccggaacggaact
ggatctccaactggcagactgaaattcaataccgacactccttccccgtcccgctctcct
ccactcaaccagtcacctggccataacccatacaatatgtattcgcaagggcagcatgtc
atgatgaatggtggtcaaactcatcaaagatttggaatgccaatgcagaaattccaacat
ccaagccatcatccacatcattcccaacaacacccacaccaccaacatcctcactcccaa
gctactcacactgctatcggccatcaacctaacttctcatccggagccctgtcaagcaca
gccccccactttactcccacccacatccccaacggcactacaaccaacgtggatgaagaa
gtcgaagagcctatgaatgagcattggcagcagcaactacaacttgctgcagagtcgaga
caagcaaactccccgcactattacgcacgggccgttgctcaacagacgaagggcatccag
ctcacaacgagcccagccgagaccaatgaaaatggttccgaagaacgcagccgttccaaa
acgaccaaagacccttttaaaagacaggattggatggctctagattttggtggacaaggt
cttcgagcaatctctacccctcttttcgactacgtttttctggaaaagctttatctcaat
cacaataaattgaaggccctccccccaaatatcggcaagctgaaaggcctcactcatttg
gacgtatccggcaatgagctaactgaacttcctgaagaaattggtatgctcattaatctc
aaaaagcttcttctattcgacaataacatccattcacttccctacgaaatgggttaccta
tatcaactggatactctaggtgtagaaggaaaccccttgaatgaagtcttcaaatcacgg
attatgcaggaaggcaccaaggcactcattacgtatcttaaagaagagatgccggttcat
ttgcctccttcggaacgagattggattgtcctggatgattcggacagaaaccccactaaa
ggccaaagggagaagtttactgccctctcctataataccctctgtgacagatcagcaacc
catcaacaacatggttatgcgccctcccgagcgcttgcttgggaatatcgcagggacctc
attttaaatgaaataaaagggtacaatgccgatattgtgtgtttgcaggaaattgaccaa
ggcagctatcatggcttcttcagagaacagcttgcatacaacgattacaagggggtttac
tggccaaagggaagagctcaaggtatgcccgaagaggaggccaaggtggtcgacggttgt
gcgacgttcttcaaaggcagtaaatacattcttctcgagaagaatatgattcatttcggc
caaactgcagtccgcagacccgatgccaaaggccaggacgacatctacaaccgattatgg
cagaaggacaatattgccgtagtcacgtatctggagaatcgattgtccggagagcggttg
atagtggtgaatgttcacctgtactgggacccagcgtataaagacgtgaagcttatccag
gctgcaattttgatggaagaggtaacgcagcttgccgaaaagtattccaagattcccgct
tgtacagataaaactgcattccgattctccgagccggagcattcgacagatggtgggggt
actgcgacgcctgtggaaccagcaccttcagttgaatatagtagtggctctcagatcccc
cttattatatgcggtgacttcaactcctaccctggatctgccgtgcatgaattgatgagc
cgtggccgtttgatcgaagaccatccggatcttgagaagcgtctctatgggaacctcagt
cgcgtcggcatgtcataccctttcaacctgaaatccgcatatggcgctattggagaactc
gactttaccaactatactcccgactttgctgatgtgatcgactacatttggtatacttcc
aacgctctgcaggtgactggcttgcttggcgcagtggacaaggagtatctgcagcgagtt
cccggcttccccaattaccattttcctagtgatcaccttgccctaatggcagagttttct
ttcaaaagcaagaaagggaaagttgtcgaagtagatttcgggccgcaacgggacagggac
agggatagagatcgggatagggcgacttga

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