KEGG   Histoplasma mississippiense: HCAG_06383
Entry
HCAG_06383        CDS       T02229                                 
Name
(RefSeq) hypothetical protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
aje  Histoplasma mississippiense
Pathway
aje03018  RNA degradation
aje03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aje00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    HCAG_06383
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HCAG_06383
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aje03019]
    HCAG_06383
   03041 Spliceosome [BR:aje03041]
    HCAG_06383
Messenger RNA biogenesis [BR:aje03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     HCAG_06383
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     HCAG_06383
Spliceosome [BR:aje03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    HCAG_06383
SSDB
Motif
Pfam: LSM DUF1280
Other DBs
NCBI-GeneID: 5445132
NCBI-ProteinID: XP_001538778
UniProt: A6R7U2
LinkDB
AA seq 104 aa
MASQLLPLELIDKCVGSKIWVVMKGDKGEEELGSDISPFLSSLTSNSEFSGTLLGFDDYV
NMVLEDVTEFDYTGSQTKLSKILLNGNNICMLIPGGEGPVATDP
NT seq 315 nt   +upstreamnt  +downstreamnt
atggcttcccaactgctccctttagagttgattgataaatgtgttggttcgaaaatctgg
gttgtcatgaaaggcgataaaggtgaggaggagttgggttcagatatttccccttttctt
tcctctctaacatctaattcagagttctccggcaccctactcggcttcgatgactacgtc
aatatggttctagaagatgtcacagaatttgattatacaggttctcagaccaagctatca
aagatactcctgaatggaaataatatatgcatgttgatccctggtggtgaaggccccgtt
gctaccgacccatag

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