Histoplasma mississippiense: HCAG_07085
Help
Entry
HCAG_07085 CDS
T02229
Name
(RefSeq) similar to U5 snRNP 100 kD protein
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
aje
Histoplasma mississippiense
Pathway
aje03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aje00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HCAG_07085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aje03041
]
HCAG_07085
Enzymes [BR:
aje01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HCAG_07085
Spliceosome [BR:
aje03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
HCAG_07085
Complex C
U5 SnRNP specific factors
HCAG_07085
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
5444348
NCBI-ProteinID:
XP_001537663
UniProt:
A6RBS7
LinkDB
All DBs
AA seq
635 aa
AA seq
DB search
MFSRQNANDVTESFNSEKSTCYLAITMDWIAENRPPGPPPEPFERSPTPPPPPPVSLVPP
PPPDAAAPPPPPDSIAPPPPPPEDAPLPEPPAAKRKKVGWGSQRSATPLSVEELLRKKRE
ADEAASKPKFLTRAEREKLALEKRAKEVENKKRLQTNGARPSPRNSETNGYNSSASRSDG
IDGSSRAPIPTGPRGMRHGEIPTAPAAMRTKQNDMPPPPSPGQKAEQKGEKRPSPEEAQA
ALIRQRYMGSDQTSNFSAKKKRRRTTERKFNFEWNADEDTSPDYNPLYQNRSIANFFGRG
RLAGFSDEFADAVTRNYARALEDRDPEAGRARAREILEMERRRKEEGGRHALDAHWSEKK
LEHMRERDWRIFKEDFNISTKGGSIPNPMRSWAESGLPKRLLSIVEQVGYTDPSPIQRAA
IPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRRNDGPYAIILAPTREL
AQQIEIEAKKFSVPLGFNVVSIVGGHSLEEQAYSLRNGAEIIIATPGRLVDCIERRMIVL
SQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNQKPDTEDAENAQAMSRHIGGKDRYRQ
TMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgttttccagacagaacgccaacgatgtaactgagagcttcaattctgagaagagcacc
tgttatttggcaataactatggattggatcgctgaaaatagaccccctggaccacccccg
gagccctttgaacgctctcctacaccacctccgccgccacccgtatcgctggtgccgcct
ccgccaccagatgccgctgctcctcctccgcccccggattcaatagctcctcctcctcct
cctcccgaagatgcgccgcttcccgagccgcctgcagctaagagaaagaaggttggctgg
ggaagtcagcggtcagcgacgcctctgagtgttgaggaactactccgaaagaagcgggaa
gctgatgaagctgcatcaaagcctaaattcctcacaagagcagaaagagagaagctcgca
ttagagaaacgcgcgaaagaggtggaaaataaaaagcgactgcaaacaaacggcgccagg
ccctcgcctcgaaattctgaaacgaacggttataattcttcagcatcaagaagtgatgga
attgatggatcttcccgggccccaattcccacggggccccgtggcatgagacacggagaa
atcccaactgctccagccgcgatgcgcacgaaacaaaatgatatgcctccacctccctct
cccggtcagaaggctgaacaaaagggagaaaagcggccttctccagaagaagcacaagcg
gccttgatacgacaacgatatatgggaagtgaccagacgtcgaatttctctgcgaagaaa
aaacggaggaggacaacggaaaggaaatttaacttcgagtggaatgcggatgaagatact
agccccgattacaatccactctatcaaaaccgttcgattgcaaatttctttggtcgaggt
cgcttagctgggttcagtgacgaatttgcagatgcggttacaagaaactacgcaagagct
ttagaagatagagatccggaggctggtagagccagagcgagggagattttggaaatggaa
agaagaaggaaagaagaagggggacggcatgccttggatgcacattggtccgagaagaag
ttggaacacatgcgcgagagggactggcgaatattcaaggaagatttcaacatcagtacc
aagggaggaagcattcccaatcccatgcggtcgtgggccgaatcgggattaccaaaacgc
cttcttagtattgttgagcaagttggatacaccgacccgtcgcctattcagcgagctgct
atccctattgcgttgcaaaatcgagaccttatcggtgttgctgtgactggttccggaaaa
actgcagcattcttactccctctgctcgtctacatagcagaactcccacgactagatgag
tttgaatggagaagaaatgacggtccgtatgcgataatcctagcgccgacacgcgaatta
gcccaacaaatcgaaatcgaagctaagaagttctctgtccctcttggattcaacgttgtc
agtattgtcggtggtcattcgctggaagaacaggcttacagtttgcgcaacggggcggag
atcatcatcgccacccccggccgtttggtagactgtatcgagagacggatgattgtcctt
agtcaatgctgctacgttatcatggacgaagccgaccgtatgattgatctcggctttgag
gagcctgtgaacaaaatcctcgacgctctccccgtcacaaatcagaaaccggatactgaa
gacgcagaaaacgcccaagcaatgagccgacatatcggcggcaaagaccgatataggcaa
acgatgatgtataccgccaccatgccttctgccgtcgagcgaattgcacgcaaatacctc
cgacggcccgcgatcgtcacaatcggcaacatcggcgaagccgtttga
DBGET
integrated database retrieval system
