KEGG   Histoplasma mississippiense: HCAG_08376
Entry
HCAG_08376        CDS       T02229                                 
Name
(RefSeq) hypothetical protein
  KO
K15171  transcription elongation factor SPT4
Organism
aje  Histoplasma mississippiense
Pathway
aje03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:aje00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    HCAG_08376
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aje03021]
    HCAG_08376
   03019 Messenger RNA biogenesis [BR:aje03019]
    HCAG_08376
Transcription machinery [BR:aje03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     HCAG_08376
  RNA polymerase I system
     HCAG_08376
Messenger RNA biogenesis [BR:aje03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     HCAG_08376
SSDB
Motif
Pfam: Spt4 Acc5b_avian_CoV ETRAMP
Other DBs
NCBI-GeneID: 5443029
NCBI-ProteinID: XP_001536594
UniProt: A6RFG0
LinkDB
AA seq 204 aa
MDVEQNAGRKDVLKSGQGVKVSVGGYVSVDLGHGIIVATSKEQGKGAQLGPAHTSRRNRK
GDKTKKKTEEEAANKKKKKKRIIMSSFYVPTGQQRSLRACMVCSIVQVHSKFMREGCPNC
DHILGLAGNGEKIQQCTSQVFEGLITLADQQASWVARWQRLEGYVPGTYAVKVTGTLPPG
VLGDLEDSGIRYIPRDGSSIDEEG
NT seq 615 nt   +upstreamnt  +downstreamnt
atggatgttgaacagaacgctggaagaaaagatgttttaaagtcgggacaaggagtgaaa
gtttcagtcggtggctatgtcagcgtcgatctcggtcatggaatcattgttgcgacgtcg
aaggaacagggcaagggagctcaacttggaccggcacacacctcaaggcggaaccgcaag
ggagacaagactaagaagaaaacggaggaggaggcggcgaataagaagaagaagaagaag
agaatcatcatgtcttccttctacgtccccacgggtcaacagcgatctctccgtgcctgc
atggtctgctcaatcgtccaggtgcacagtaaattcatgcgtgaaggctgcccaaactgc
gaccacatcctcggcttagccggtaacggcgagaagatccaacaatgcacatcccaggtg
ttcgaggggctgataacactggcggatcagcaggcgtcgtgggtggcgcgctggcagagg
ttggaagggtatgtgcctggcacgtatgcggttaaggtgacgggaacgttgccgccaggt
gtcctaggtgatctggaagactcggggattcgatatattccgagagacggaagctcgatt
gacgaggaaggttga

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