Arthrobacter jiangjiafuii: KKR91_05095
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Entry
KKR91_05095 CDS
T07979
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ajg
Arthrobacter jiangjiafuii
Pathway
ajg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ajg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KKR91_05095 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ajg03400
]
KKR91_05095 (mfd)
Enzymes [BR:
ajg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KKR91_05095 (mfd)
DNA repair and recombination proteins [BR:
ajg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KKR91_05095 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
PBP_like_2
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QWC10977
UniProt:
A0A975M6U2
LinkDB
All DBs
Position
1066729..1070346
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AA seq
1205 aa
AA seq
DB search
MSLNGLRAALAEDPSYARVRTLASRTPERRSEDLQIGAPQGMRAALLAEMVDGLAAAADD
AGTGSAATAPPVVLAVTATGREAEDLAAALRSYLPLAGIEEFPSWETLPHERLSPRSDTV
GRRLSVLRRLAHPEGHPISVIVAPVRAVVQPLVAGLGDLQPVALKVGEERAFDAVVKQLS
EAAYARVDMVSHRGEFAVRGGILDVFPPTEDHPIRIDFFGDEVDSMRWFAVADQRTLTGP
HITHPTELYAPPCREILITPSVMSRAAKLQGQMPAAADMLEKIAGGIAVDGMESLAPVLV
DEMVPLMAQLPAGSLSVVIEPEKVRARAHDLAATNEEFLAAAWATASDGGAAPLDLSAGI
SADLEAASFRSLADTRSAALANSVGWWSITSFNPDDETVLDIDTLTINAREPRGYQGDVA
EMMEFIGARVRDAWRVVVVTEGPGPASRLAELFKDNDIPASLTESVDTEPAPGIISITTA
SAGRGYVFDGLKTGLLTEADLLGRASAYSTRDMRKMPSKRRNAVDPLQLHEGDFVVHEQH
GVGKFVELIQRATGAGQNKTVREYMVLEYAPAKRGAPGDRLFVPTDQLDQITRYVGGETP
VLSKMGGSDWAKTKSRARKAVKEIAGELIRLYSARMASKGHAFAKDTPWQRELEEAFPYV
ETPDQLTTINEVKADMEKEVPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTL
LAQQHMETFGERFSGFPVRVESLSRFQTSKQAKETIEGVKNGSVDVVIGTHRLLSQEVQF
KDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPP
EERHPVLTYVGPYTDRQASAAIRRELMREGQVFFVHNRVSSIDRTAAHLAELVPEARIAV
AHGQMSESKLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDRADHFGLSQLHQLR
GRVGRGRERAYAYFLYPSEKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGNLLG
GEQSGHIAGVGFDLYIRLVGEAVADYRGEAEEKAAEMKIELPVNAHLPHDYVPGERLRLE
AYRKLASAVTYEAIDEVLAELVDRYGEPPLAVQNLISVARFRVGAREAGLTDVALQGNFI
KFAPADLPESRTMRLQRMYPGAQIKPALNAVLVPKPKTARIGGRDLVDAEILAWAQQVVD
AVFKE
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaacggactgcgcgccgcactggccgaagacccgtcctacgcacgggtgcga
accctcgcctcacggaccccggaacggcgcagcgaggacctgcagatcggcgcgccgcaa
ggcatgcgggcggcgctgctggcggaaatggtggacgggctcgccgcagcggccgacgac
gccggcaccggcagcgctgccacggcacctccggtggtgctcgcggtgaccgcgaccggc
cgcgaggcggaggacctggccgcggcgctgcggtcctacctgccgctggccggcatcgag
gagttcccctcctgggagaccctgccgcatgaacggctctcgccacgctcggacaccgtg
ggccggcggctctcggtcctgcgccggctggcccaccccgaggggcacccgatctccgtg
atcgtggccccggtccgcgccgtcgtccagcccctggtggccgggctcggcgacctgcag
ccggtggccctgaaggtgggggaggagcgggcgttcgacgccgtcgtcaagcagctctcc
gaagccgcctacgcgcgggtggacatggtctcgcaccgcggcgagttcgcggtgcgcggc
ggcatcctcgacgttttcccgccgaccgaggaccatccgatccggatcgacttcttcggc
gacgaggtggactccatgcgctggttcgccgtcgccgaccagcgcaccctgaccgggccg
cacatcacccacccgaccgagctgtacgctccgccgtgccgggaaatcctcatcaccccc
tcggtgatgagccgcgccgcgaagctgcagggccagatgccggccgccgctgacatgctg
gagaagatcgccggcggcatcgccgtcgacggcatggaatccctggccccggtgctggtg
gacgaaatggtgccgttgatggcgcagctgcccgccggatcgctctccgtggtgatcgaa
ccggagaaggtccgcgcccgcgcgcacgaccttgccgccacgaatgaggaattcctcgcc
gccgcctgggccacggcgtccgacggcggtgcggcgccgctggacctgtccgccggcatc
agcgcggacctggaggcggccagcttccggtcgctggctgacacccgctccgcggcgctc
gccaactcggtgggctggtggtcgatcacctcgttcaacccggacgacgaaaccgtgctg
gacatcgacaccctgaccatcaacgcgcgcgaaccccgcggctaccagggcgacgtggcg
gagatgatggagttcatcggcgcccgggtgcgcgacgcctggcgcgtcgtcgtcgtcacc
gaaggtcccggtccggcatcgcggctggcggagctgttcaaggacaacgacattccggcc
tcgctcaccgaatcggtggacaccgagccggcgccggggatcatctcgatcaccaccgcc
agcgccggccgcggctacgtttttgacgggctgaagaccggcctgctcaccgaggcggac
ctgctcggccgggccagcgcctactccacccgcgacatgcgcaagatgccctccaaacgg
cgcaacgccgtcgaccccctccagctgcacgaaggcgactttgttgtccacgagcagcac
ggtgtcggcaagttcgtggagctgatccagcgggccaccggcgccgggcagaacaagacc
gtacgcgagtacatggtgctggaatatgcgccggccaagcgcggcgcccccggtgaccgg
ctcttcgtgcccaccgaccagctggaccagatcacccgctacgtgggcggggagaccccg
gtgctctccaaaatgggcggctcggactgggcgaagaccaagtcccgggcgcgcaaggcg
gtcaaggagatcgccggcgagctgatccgcctctactcggcccggatggcctccaagggg
cacgcctttgcgaaggacacgccctggcagcgcgagctggaggaggcgttcccgtatgtg
gagacccccgaccagctgaccaccatcaacgaggtcaaggccgatatggagaaggaagtc
ccgatggaccgcctggtctccggcgacgtcggctacggcaagaccgagatcgcggtgcgc
gccgcgttcaaggcggtgcaggacggcaagcaggtggcggtgctggtacccaccacactg
ctggcccagcagcacatggagaccttcggcgaacgcttctccggcttcccggtccgggtg
gaatcgctgtcccggttccagacctccaaacaggccaaggaaaccatcgagggcgtgaag
aacgggtccgtggacgtggtgatcggcacgcaccggctgctctcgcaggaggtccagttc
aaggacctgggcctggtgatcgtggatgaggagcagcgcttcggtgtggagcacaaggaa
gcgctgaagaagatgcgcaccaacgtggacgtcctggcgatgagtgcgacgccgattccg
cgcaccctggagatgtcgctgaccgggatccgggaaacctccaccctggccaccccgccg
gaggaacggcatccggtgctgacctacgtgggtccgtacaccgaccggcaggcctccgcc
gcgatccgccgcgagctgatgcgcgaaggccaggtgttctttgtgcacaaccgggtctcc
tcgatcgaccgcaccgccgcgcacctggcggagctggtgccggaggcacggatcgccgtg
gcgcacgggcagatgagtgaatccaagctcgagcagatcatcgtggacttctgggagaag
cgcttcgacgtgctggtctgcaccaccatcatcgaaaccggcctggacatctccaacgcc
aacacgctgatcgtggaccgggccgaccactttggcctgtcccagctgcaccagctgcgc
gggcgtgtgggccgcggccgggaacgggcctacgcatacttcctctatccctccgaaaag
ccgctgggcgaggtggcgctggaacggctcaaggccgtggccacgcacaacgagctcggg
gcgggcatgcagctggcgatgaaggacctggagatccgcggggccggcaacctgctcggc
ggggaacagtccgggcacatcgccggggtgggctttgacctgtacatccggctggtgggc
gaggcggtcgcggattaccgcggcgaggccgaggagaaggccgcggagatgaagatcgag
ctgccggtgaacgcgcacctgccgcacgactacgtgccgggggagcggctgcgcctcgag
gcctaccgcaagctcgcctccgccgtgacgtacgaggcgatcgacgaggtgctggccgaa
cttgtggaccgctacggcgagccgccgctggccgtgcagaacctgatctcggtggcccgg
ttccgggtcggggcgcgcgaggcagggctgaccgacgtcgcactgcaggggaacttcatc
aagtttgctccggcggacctgcccgaatcgcgcaccatgcggctgcagcggatgtatccg
ggagcgcagatcaagccggctctgaacgctgtgctggtgcccaagccgaagaccgcccgg
attggcggccgggacctggtcgacgccgagatcctggcttgggcgcagcaggttgtggac
gcggtgttcaaggagtag
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