Acidipropionibacterium jensenii: C0Z10_07140
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Entry
C0Z10_07140 CDS
T05836
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aji
Acidipropionibacterium jensenii
Brite
KEGG Orthology (KO) [BR:
aji00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aji03019
]
C0Z10_07140 (hrpA)
Enzymes [BR:
aji01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C0Z10_07140 (hrpA)
Messenger RNA biogenesis [BR:
aji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C0Z10_07140 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
HA2_N
AAA_23
AAA_30
NACHT
nSTAND3
SLFN-g3_helicase
T2SSE
Ploopntkinase3
ResIII
AAA_16
FtsK_SpoIIIE
TsaE
Motif
Other DBs
NCBI-ProteinID:
AZZ39560
UniProt:
A0A3Q9UE69
LinkDB
All DBs
Position
complement(1589575..1593588)
Genome browser
AA seq
1337 aa
AA seq
DB search
MPAHASHLEGELPDGGTIRFDPDLPIAAHADEIADLIDHHQVVVVAGETGSGKTTQLPKI
CLALGRRHIAHTQPRRIAARSVADRIADEMGVEIGNQVGFQVRFTKRATRATALTVMTDG
VLLAEISHDRELRAHDTIIIDEAHERSLNIDFLLGYLKQLLARRPDLKVIITSATIDTAR
FSAHFDDAPVIEVSGRTYPVEIRYRPLDPAEDLAEDEDDITVAADPIDQTTGICRAVQEL
SREGTGDILVFLAGERDIRDAAEALTDLRLRDTEILPLFARLSAAEQHRVFTRHPGRRIV
LATNVAETSLTVPGIRYVIDPGTARISRYSVRTHVQRLPIEPVSQASANQRSGRCGRVAP
GICIRLYSQRDFDSRPEFTQPEILRTNLAAVILQMAQARLGAITDFPFVEAPDHSQVADG
LRLLDELGALKSGHREEPRLTRIGHQLASIPVDPRLGRMILEGARQHSLREVLVIVAALS
IPDARERPADKRDKADVFHHRFLTETGLQRAMHPETADQNEVGGPVDQGGDILAIHRLWR
YLHHQRKALSGSAFRRMCHREFLNFLRVREWEDLHSQLKQICRELKLERNKEAAPEDRIL
VALLSGLLSHIGLAEVADKQKNRTTGDKRRRGHRSGPREYLGARGARFAINPGSALAKHP
PELVMAVELVETSRLWARTVAGVQPEWVEEVGGHLLKRQYSEPHWAQSTASVVATERATL
YGVPVWADRLVNYARIDPVVAREIFIRSALVERDWRANHGFLVHNDRVRNQAEDLEERSR
QRGLVADDDALFAFYDRRIPSDIVSANHFNAWWRRVEDRHQLDLSLDDLVDPQAVARDDF
PDHWEVGELSLPVRYVFDPGSGHDGVTVTIPLALLNQVPSEPFSWQVPGLRTELATELIR
SLPKKVRTQLVPAPDRARQALAWLESPDPGAGHPDVPRGDHDAPFTAELGRALTALTGVL
IDDSDWRPDQIPAHLRVGFDVVDAEGRRTGQVGSPQRGSSKHKPPKHEAGQHDTSKQSRS
RVAHSEDLSALRVDLAPKVSVSLTRAAGDDQVHGATDWAFGTLAREVSLRRSGADAVGYP
CLVDEGSTVGTAVRDSVAAQTRSHGAGVVRLLLLNLPDTTTWTVAHLSNRTKLALAGSPY
PSVPALLADSRRKAVDSLARRHAGDLSDIRDRQAFEKLALAVRQEAAETMARVVSTAAEI
LTAWGEARSAVAALAPGPARQDMTNQLSDLVFLNFISATPDPWYQRMSRWMREVAVRAEA
VSTNPGRDARWMAELDPLLDAYDSLCAAQPPGPLPAGVEEIGFLIEELRIQLFAQRLQTH
VPVSVKKVRTAISRLAS
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgccagcacacgcgtcacacctggagggtgaactgcccgacgggggcaccatccgattc
gatcccgatctgccgatcgccgcacacgccgacgagatcgccgacctcatcgaccaccac
caggtcgtggtggtggccggggagaccggctcgggaaagaccacccagctccccaagatc
tgcctggccctgggacgccggcacatcgcccacacccagccccgtcggatcgccgcgcgc
agcgtcgccgaccggatcgccgatgagatgggggtggagatcggcaaccaggtggggttc
caggtccgcttcaccaagcgcgccacccgtgccaccgcgctgaccgtgatgaccgacggc
gtcctgctcgccgagatctcccacgaccgggagctgcgcgcccacgacacgatcatcatc
gacgaggcccacgagcgcagcctcaacatcgacttcctgctcggctacctcaaacagctg
ctggcgcggcgtcccgacctcaaggtcatcatcacctcggccaccatcgacaccgcgcgg
ttctccgcccacttcgacgacgcgccggtgatcgaggtctccggacgcacctaccccgtc
gagatccgctaccggccgctggatcccgccgaggacctggcagaggacgaggacgacatc
accgtcgccgccgacccgatcgaccagacgaccggcatctgccgggccgtccaggagctg
agccgcgaggggaccggcgacatcctcgtcttcctggcgggggagcgcgacatccgcgac
gccgccgaggcgctgaccgacctgcgactgcgcgacaccgagatcctcccgctgttcgcc
cgactctcggccgccgagcagcaccgggtcttcacccgccaccccggacgacggatcgtg
ctggccaccaacgttgcggagacctcgctgacggtccccgggatccgctacgtcatcgat
cccggcaccgcccggatctcccgctactcggtgcggacccacgtccaacgactgcccatc
gagccggtctcccaggcctccgccaaccagcgatccggacggtgcggacgagtggccccc
gggatctgcatccggctgtactcccagcgcgacttcgactcccgccccgagttcacccag
ccagagatcctgcgcaccaacctggccgccgtcatcctgcagatggcccaggcacggctc
ggcgccatcaccgacttccccttcgtcgaggcccccgaccactcccaggtggccgacggc
ctcaggctgctcgacgaactcggcgcgctgaagtccggccaccgcgaggagccccggctg
acccggatcggtcaccagctcgcctcgatccccgtcgacccccggctcggacggatgatc
ctggagggggcccgccagcacagcctgcgcgaggtgctggtgatcgtggccgcactgtcg
attcccgatgcccgcgaacgaccggccgacaaacgggacaaggccgacgtcttccaccac
cggttcctcaccgagaccggcctgcagcgcgccatgcaccccgagaccgccgaccagaac
gaggtgggcggaccggtcgaccagggcggcgacattctggccatccaccggctgtggcgc
tacctgcaccatcagcgcaaggcgctgtcgggatcggccttccggcggatgtgccaccgc
gagttcctcaacttcctgcgtgtgcgcgagtgggaggacctgcactcccagctcaagcag
atctgccgcgaactcaagctggagcgcaacaaggaggccgcccccgaagaccggatcctg
gtcgccctgctgtcgggactgctgtcccacatcggtctggccgaggtcgccgacaagcag
aagaacagaaccaccggggacaagcggcgccggggccaccggagcggcccccgcgagtac
ctgggcgcccgcggagcacggttcgcgatcaacccgggatcggcgctggccaagcatccg
cccgagctcgtgatggccgtcgaactggtggagaccagccgactgtgggcgcgcacagtc
gccggcgtccagcccgagtgggtcgaggaggtcggcgggcacctcctcaaacgccagtac
tccgagccgcactgggcgcagtccaccgcctcggtggtggccaccgagagggccaccctc
tacggcgtgccggtgtgggccgaccggctggtcaactacgcccgcatcgacccggtcgtc
gcccgggagatcttcatccgatcggccctggtcgaacgggactggcgcgccaaccacggt
ttcctggtgcacaacgaccgggtccgcaaccaggccgaggacctcgaggagcgctcccgg
cagcgcggtctggtcgccgacgacgacgccctgttcgccttctacgaccgacggatcccc
tccgacatcgtctcggccaaccacttcaacgcctggtggcgacgcgtcgaggaccgccac
cagctcgacctgtccctggacgacctggtcgacccgcaggcggtggcccgcgacgacttc
cccgaccactgggaggtgggggagctgtccctgccggtgcgctacgtcttcgacccggga
tccggccacgacggcgtcaccgtcaccatccccctcgccctgctcaaccaggtcccctcc
gagccgttcagctggcaggttccgggtctgcgcaccgagctggccaccgaactcatccgc
tcgctgcccaagaaggtgcgcacccagctggttcccgcccccgaccgggcccgtcaggca
ctggcctggttggagagtccggaccccggcgcagggcaccccgacgttccccggggcgat
cacgacgcccccttcaccgctgagctggggcgcgctctcaccgcgctgaccggggtgctc
atcgacgactccgactggcgccctgaccagatccccgcccacctgcgggtcggcttcgac
gtcgtcgatgccgagggacgccggacgggacaggtcggcagcccccagcgcgggtcgtcg
aagcacaagccaccgaagcatgaggcggggcagcacgacacgtcgaagcagagcaggtcc
cgggtcgcccactccgaggatctgtccgcgctgcgcgtggacctggcgccgaaggtgtcg
gtctccctcacccgggccgccggtgacgaccaggtccacggagccaccgactgggcgttc
ggcaccctggcccgggaggtctcccttcgacgcagtggggccgacgccgtcggctatccc
tgcctggtcgacgaggggtcgaccgtcggcaccgcggtgcgcgactcggtggccgcccag
acccgcagccatggcgccggtgtcgtgcggctgctgctgctcaacctgcccgacacgacc
acctggaccgtcgcccacctgtccaatcgcaccaagctcgccctggccggctcgccctac
cccagcgtcccggcactgctggccgactcccgacgcaaggccgtcgactcgctggcccgc
cgtcatgccggtgacctgtcggacatccgagaccggcaggccttcgagaagctcgccctg
gcggtccgtcaggaggccgccgagacgatggcccgggtggtgtccaccgccgccgagatc
ctcaccgcctggggggaggcccggtccgccgtggcggcactggcccccggaccggcgcgt
caggacatgaccaaccagctgtcggacctggtcttcctcaacttcatctcggccactccc
gacccctggtaccagcggatgtcccgttggatgcgcgaggtcgccgtgcgtgccgaggca
gtctcgaccaatcccggacgtgacgcccgctggatggccgagctcgacccgctgctggac
gcctacgactcgctgtgcgccgcccagccccccggaccgctgcccgccggggtcgaggag
atcggattcctcatcgaggagctgcgcatccagctgttcgcccagcgcctccagacccac
gtgccggtctcggtgaagaaggtccgcaccgccatctcccggctggcctcctga
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