Acidipropionibacterium jensenii: C0Z10_09725
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Entry
C0Z10_09725 CDS
T05836
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aji
Acidipropionibacterium jensenii
Pathway
aji03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aji00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C0Z10_09725 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aji03400
]
C0Z10_09725 (mfd)
Enzymes [BR:
aji01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C0Z10_09725 (mfd)
DNA repair and recombination proteins [BR:
aji03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C0Z10_09725 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
AroM
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AZZ39983
UniProt:
A0A3Q9ULS2
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All DBs
Position
complement(2158474..2162136)
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AA seq
1220 aa
AA seq
DB search
MSLPGLVSLLSHEPVLARAVRDGLTGHVQTLDLTAAAPSRPAVAAVLADSFEGSGRGLPI
LMVTSTFRQAEEVTATLESWLTPEEVCYYPAWETLPHERLSPRSDTVGRRLAVLRRLLGT
GGQRPPKVVVAPIRAVLQPQVAGLGRIEPVVVRVGQEYDLTRLCQDLVDAAYLRVDMVER
RGEFAVRGGILDVFPPVLDHPVRIDFFGDEVEEIRSFSVADQRSTDQTVDLVTAAPCREL
ILSDQVRARARALLPDHPELADMLERIGQGQAVEGMEALIPALVDQVELLLDVLPPESLV
LACDPELIRTRAAELVRTSEEFLNAGWAAAATGGDAPIDLAAVGYRGLAEVRHHALDRGM
SWWTLSPFSVDLPSSDSAEASQPGEDAGETSAEEPVASSAPDTLDLRLEEVDPWHGDVDS
AVSAMSGSLAEGWTVVLAVEGEGLAHRLAELLAEHDVACRLETDLPDSGPDGTGAAPVVH
IIRAHQHQGFRSPRLRLVVHGTADLTGQQETADRGTRRMPARRRNQIQPLELKPGELVVH
EQHGVGRYVEMIQRTVAGATREYLVIEYAPARRGQPGDRLFVPMDSLDQITRYVGSDSPA
LDKMGGADWKKRKARAKKAVRKIAAELIKLYAARQATKGHAFGPDSPWQRDLEDAFAYVE
TPDQLTTIADVKHDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL
VQQHTQTFSERYAGFPVNVASLSRFQTESQAREVRQGLERGTIDVVVGTHRLLSDTMKFK
DLGLVIIDEEQRFGVEHKEALKKLRVDVDVLSMSATPIPRTLEMAVTGIREMSTIATPPE
ERHPVLTFAGPYDDGQVVAAIRRELAREGQVFFIHNKVSDIEKTAARLRELVPEARVATA
HGQMHEKQLEQIMLDFWEQRADVLVCTTIVESGLDISTANTLVVDRADRMGLSQLHQLRG
RVGRSRERGYAYFLYPADKPLTETAHDRLSTMAQHTDLGAGMAIAMKDLEIRGAGNLLGG
EQSGHIADVGFDLYIRLVGDAVAEFRGDKAEEEPEMRIELPVDANLPVDYVESERLRLEM
YKRLAEVRSDQEVDAIRDELLDRYGPLPETVEALLGVARFRLLCRAHGIREVVPTGSSIR
FSPLHLPESRAMRLKRLYPGATVKDAAGLVLVPKPRTARVGGHPLGGAQLLDWARTVVTE
VLSTPQPARAPEQARPAVVG
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
gtgtctctgcctggcctggtctccctgctgtcccatgaacccgtcctcgcccgggcggtc
cgcgacggactgaccggtcacgtccagaccctcgatctcaccgccgcggccccctcgcga
ccggccgtcgccgccgtccttgcagactccttcgaggggtcgggccgcggcctcccgatc
ctcatggtcaccagcaccttccggcaggccgaggaggtcaccgccaccctcgagtcatgg
ctgactcccgaggaggtctgctactacccggcctgggagactctcccgcacgagcgcctc
agtccgcgttccgacaccgtcggccggcggctggcggtgcttcgccgactgctgggcacc
ggtggccagcgccccccgaaggtcgtggtggcgccgatccgcgcggtcctccagccccag
gtggccgggctcggcagaatcgaacccgttgtggtcagggtggggcaggagtacgacctc
acccggctctgtcaggatctggtcgacgccgcctacctgcgcgtcgacatggtggagcgt
cgcggcgagttcgccgtacggggagggatcctcgacgtcttcccgcccgtgctcgaccac
ccggtgcgcatcgacttcttcggcgacgaggtggaggagatccgctccttctcggtcgcc
gaccagcgctccaccgaccagacggtggacctcgtgaccgccgccccgtgccgcgagctc
atcctctccgaccaggtgcgcgcgcgggcccgtgcgctgctgcccgaccatcccgagctg
gccgacatgctcgagaggatcggtcaggggcaggccgtggagggcatggaggccctcatc
ccggccctggtcgaccaggtcgaactgctgctggacgtgcttcctcccgagtccctggta
ctggcttgcgaccccgaactcatccggaccagggcggccgaactggtgcgcacctccgag
gagttcctcaacgccggctgggccgccgcggcaaccgggggagacgctccgatcgacctg
gccgcggtcggctaccgcggcctcgccgaggtccgccaccacgccctggaccgggggatg
tcctggtggacgctgtcccccttcagcgtcgacctgccctcctcggactccgcagaggca
tcccagcccggcgaggacgccggcgagacctccgccgaggagcccgtcgcgtcctcggcc
cccgacaccctcgacctcagactcgaggaggtcgacccgtggcacggcgacgtcgactcc
gcggtgtcggccatgtcgggatcgctggccgagggctggaccgtcgtgctggccgtcgag
ggggagggactcgcccatcggctggccgagctgctcgccgagcacgacgtcgcctgccgg
ctcgagaccgacctgcccgactccggacctgacggcaccggtgcggcaccggtggtccac
atcatccgcgcccaccagcaccagggattccgctccccgcggctcagactggtggttcac
ggcaccgccgacctcaccggtcagcaggagaccgccgaccgcggcacccgccggatgccc
gcccggcgacgcaaccagatccagcctctggagctcaagccgggggagctggtcgtccac
gagcagcacggggtcggccgctacgtcgagatgatccagcgcacggtggccggggccacc
cgcgagtacctggtcatcgagtacgcccccgcccgccggggccagcccggcgaccggctc
ttcgtcccgatggactccctggaccagatcacccggtacgtcggctccgactcgcccgcc
ctggacaagatgggcggggcggactggaagaagcgcaaggcccgggcgaagaaggcggtc
aggaagatcgccgccgagctcatcaagctctacgccgcccggcaggccaccaagggccac
gccttcggccccgacagcccctggcagcgcgatctcgaggacgccttcgcctatgtcgag
acccccgaccagctcaccacgatcgccgacgtcaagcacgacatggaacaggtcgtcccg
atggaccggctggtctgcggcgatgtcggctacggcaagaccgagatcgcggtgcgggcc
gccttcaaggcggtccaggacggcaagcaggtcgccgtcctggtgcccaccacactgctg
gtccagcagcacacccagactttcagcgagcgctatgccggattcccggtcaacgttgcc
tcgctgtcgcggttccagaccgagtcccaggcgcgggaggtcagacagggtttggagcgc
ggcaccatcgacgtcgtggtgggcacccaccggctgctgtcggacaccatgaagttcaag
gatctcggcctggtcatcatcgacgaggagcagcgcttcggcgtcgagcacaaggaggcc
ctcaagaagctgcgggtcgacgtcgacgtgctgtcgatgagcgccaccccgatcccccgc
accctggagatggccgtcaccgggatccgggagatgagcaccatcgccaccccgcccgag
gagcgccacccggtgctcaccttcgccggaccctatgacgacggccaggtggtggcggcg
atccgtcgcgagctggcccgggagggtcaggtcttcttcatccacaacaaggtctccgac
atcgagaagaccgcggccaggctgcgcgagctggttcccgaggcccgggtggcgaccgcc
cacgggcagatgcacgagaagcagctcgagcagatcatgctggacttctgggagcagcgc
gccgacgtcctggtgtgcaccaccatcgtcgagtccgggctggacatctccaccgccaac
accctggtcgtcgaccgcgcggaccggatgggactgtcccagctccaccagctgcgcggc
cgggtgggccgcagccgggagcgcggctacgcgtacttcctgtacccggccgacaagccg
ctcaccgagaccgcccacgaccggctgtcgacgatggcccagcacaccgatctgggcgcc
gggatggcgatcgcgatgaaggacctggagatccgcggcgccggcaacctgctgggcggg
gagcagtccggccacatcgccgacgtcggcttcgacctgtacatccggctggtcggcgac
gccgtcgccgagttccgcggcgacaaggccgaggaggagccggagatgcgcatcgaactg
ccggtcgacgcgaacctgccggtcgactacgtggagtccgagaggctgcgcctggagatg
tacaagcgactcgccgaggtgcgctccgaccaggaggtcgacgccatccgcgacgagctg
ctggaccgctacgggccccttcccgagaccgtcgaggcgctgctcggggtggccaggttc
cggctgctgtgccgggcccacggcatccgcgaggtggttcccaccggctcgtcgatcagg
ttctccccgctccacctgccggagtcccgggcgatgcggctcaagcggctgtacccgggg
gcgaccgtcaaggacgccgccggcctggtcctggtgcccaagccccgcaccgcacgggtg
gggggtcacccgttgggcggcgcccaactgctcgactgggcgcgcacggtggtcaccgag
gtgctctcgaccccgcagccggcgagggccccggagcaggcccgtccggcggtggtcggc
tga
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