Apostichopus japonicus (Japanese sea cucumber): 139954772
Help
Entry
139954772 CDS
T10891
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj04140
Autophagy - animal
ajj04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139954772
04148 Efferocytosis
139954772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ajj04131
]
139954772
Membrane trafficking [BR:
ajj04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
139954772
Hops complex
139954772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
zf-C3HC4_2
TPR_Vps41
zf-C3HC4
zf-RING_2
zf-C3H2C3
zf-rbx1
zf-RING_5
TPR_GEMI5
Beta-prop_EML_2
TPR_Vps8
zf_RING_Vps8_fungal
TPR_11
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
139954772
NCBI-ProteinID:
XP_071810797
LinkDB
All DBs
Position
17:complement(12148565..12180265)
Genome browser
AA seq
1126 aa
AA seq
DB search
MTFLQWRRFTFFDKETVKRLGSDEDFTGLKDVDITACTSGHGSIVFGDTEGAIHMLNRDL
DLVSFRAYELRVSHLYQLKQHNIIVSVGNDESGTNPIIKVWHLDKLDKSGNPTATRLTRA
LPGNGRPSPVTAMTVSENLNLMAIGFLDGSVTIYRGDVTKDRHSKPQPLFQEKSMVTGLA
FRHSQYGTTLFVSTETSVISTTVTSKGCNKVILDGHGCSLGCSVLSDSSQDQQFVIGRSD
ALYFYQSDQRGSCLIFEGNKNRLQWFRNYLMVVTKDNKAIPRGIGGDGGGKVMDMVTVYD
VTNKFIAYSAPVPEVISVIVEWGSLYILGGDRKLYLLREKDTQTKLETLFKKNLYVMAIN
LAKSQHYDSDGLIDIFTQYGDHLYSKGDHDGAIQQYIKTIGSLEPSYVIRKFLDAQRIHN
LTAYLQALHKQGLANEDHTTLLLNCYTKLKDNSKLEEFIRTEEREVNFDVETAIKVCRQA
GYFEHALYLSEKHRRHDWYLKIQLEDIKDFQEALSHISGLQFIEAMENMKKYGKTLMSQE
PDKTTDLLKLLCTEYKPKDAKLLIEGEQEEPLVDMATLEGGLPPPLQRASAEEFIHIFVN
NSPKLSEFLEHMIKAQPESSQLIYNTYLELCLNDMMHKQDGSRDKRDVEKKAMDLLQTGE
GHYDIDLALVLCQKHNFSKGILYLYEKAKLYQQILHYHMDHDKYDNILDVCKRYGTQDPN
LWVQALSYFATKQKDCKPYIVDVLSQIDRHNLLPPLLVIQTLAHNSTATLTVIKDYIVRR
LQQENDQITEDERLIEQYREETKIKRAEIEEMKASAKIFQVSKCSVCSHPLELPSVHFLC
QHSYHQSCFESYADNDQECPACLPENRKVLDIIKAQEQNKDLDEEFHRQLENAQDGFSVV
ADYFGRGVFNKVILEEKFPSRETPAPAVSQIQPLPSQVPPVQQLQRANTPEHSSPSSSKK
TPSSSGRSTPHSSGRSTPQGWSITPAVQPKSSSSGHSSYGSDQPPFIHSGSGGSAVSDRT
APAARQMGSSASPKRTQTTTVAAAPPSVKPVPSRLGSNSSSGQKEELGRPSGSPRRHQAP
KEDALNPFLSSDKEERPRSPPNPFEEPEGYNPFEEDEDESNPFFNS
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgacgttccttcagtggcgaagatttaccttctttgataaagaaacagtgaaaagactt
ggctctgatgaagattttacaggattgaaggatgttgacattactgcatgtaccagcgga
catggcagtattgtgttcggagacacagagggcgccatccacatgttgaatagggacttg
gatcttgttagtttcagggcatatgaactgagagtgtcacatctgtaccagttaaagcaa
cacaacattattgtatctgttgggaatgatgaatctggaacaaaccccatcattaaagtc
tggcatctggataagcttgataagagtggtaacccgacagctacacggctcactcgggcc
ttgccaggtaacggcaggcccagtccagtcactgctatgacagtcagtgagaaccttaac
ctcatggccatcggatttctggatggcagtgttactatctacagaggagacgtgaccaaa
gacaggcacagtaaaccgcaacctctgttccaggaaaagtcaatggtgacaggtctggca
ttcaggcacagccagtacggcaccactctgtttgtttccacggaaacatctgtcatctcc
actaccgtcacgtccaaaggatgcaacaaggttatattagatggtcacggctgttccctg
ggatgttcagtcctcagcgactcatctcaagaccaacagtttgtgattggtcgttcagat
gcgttatatttctaccagtcggatcaacgagggtcctgtctcatctttgaagggaacaag
aacagactgcagtggttcaggaattatctcatggtggttaccaaggacaacaaggctatt
ccgagagggatagggggagacggaggcggaaaagtgatggacatggttaccgtgtatgac
gtgactaacaagtttattgcatattccgctccagtgccagaggtcatcagtgtcatcgtg
gagtggggctccctctatatacttggaggagacaggaagctttaccttctaagagagaag
gacacccagacgaaactagaaacactcttcaagaagaacctatatgtgatggctatcaac
ttagcgaagagtcagcactacgatagcgatggactcatcgacatatttacgcaatatggc
gatcacctttacagcaaaggcgatcacgatggcgctatacaacaatacatcaaaaccatc
ggttcgctggagccttcatatgtcattagaaagttcttagatgcacagaggatacacaac
ctcacagcgtatcttcaagcgctgcataaacaaggcctggccaacgaggaccacacaacc
ctcctgctaaactgttacactaaactcaaggacaacagtaaactggaagaatttataagg
accgaggaaagagaggtcaactttgatgtggagacagcaataaaggtgtgccgtcaggca
ggatacttcgagcacgccctctatctgtctgagaaacacagacgtcacgattggtatctc
aagatccagctggaggacattaaggactttcaggaagctttgtcgcatatctcaggtctc
caatttattgaggcgatggagaatatgaagaaatatggcaagacgttgatgagtcaggaa
ccagacaaaaccacagatctcttgaagctgttgtgtacggagtataaaccaaaagacgca
aaacttttgatcgaaggagaacaggaggaacctcttgtcgacatggcaacactagagggc
ggtcttcctcctccacttcagagggcctccgctgaggaattcatccacatctttgtgaac
aactcgccaaaacttagtgaatttttggagcacatgataaaggctcagccggaatcttcg
cagttgatttacaatacttacttagagctgtgtctgaacgatatgatgcataaacaagat
ggcagccgagataagagagatgtcgaaaagaaggccatggatctcttacagacaggagag
ggtcactatgatatcgacctagcccttgttctctgccagaaacataacttcagtaaaggt
atactttacctttacgagaaggctaaattataccaacaaatacttcactaccacatggac
catgacaaatatgataacattctcgatgtatgtaaaagatatggaactcaggatccgaat
ttatgggttcaagctctgtcctattttgccacgaagcagaaggactgcaagccgtacatc
gtggacgtgctctcgcagatcgaccgtcataatctgctgcccccactactggtgatacag
accttagcgcataattctacagctactctcaccgtcatcaaggactacatcgtccgtaga
ctccagcaggagaatgaccagatcacagaggacgagcggttgatcgaacaatatcgagag
gagaccaagataaaacgagcagaaattgaagaaatgaaagcgagtgccaagatattccaa
gtgtccaagtgtagcgtctgttctcacccgctggagttaccctcagtacactttctctgc
cagcattcctatcatcaaagttgcttcgagagttacgccgacaacgatcaggagtgtcct
gcgtgtttacccgagaaccgtaaagtcttagacatcatcaaagcacaggaacagaacaag
gatctcgacgaggagttccacagacagctggagaacgctcaggatggtttctctgtggtt
gcagattattttggacgaggagtatttaacaaggtcattcttgaagagaaattcccttcc
cgagaaaccccagcaccagcagtctcgcagatacaacccctgccctctcaagtacccccc
gtacaacagctgcagagagccaacactcccgaacattccagtccatcttctagtaaaaag
accccatcttcgtccggacggagtacccctcattcctccggtcgcagcaccccacagggc
tggagtatcacgcctgccgtacaacctaaatccagcagcagcggtcactcctcctacgga
tctgaccagccaccatttatccacagcggtagtggtggcagtgcagtcagtgaccgtaca
gcgcccgctgcgagacagatggggtcctctgcgtctcctaagaggacacaaactacaacg
gtggcagccgccccaccctctgtgaagcccgtaccctctaggctgggatcaaatagttcc
tctgggcagaaggaagaattggggaggccatcagggagtccgaggagacatcaagcccca
aaggaggatgccctgaacccattcctcagctcggataaagaagagaggcccaggagccct
ccgaatccattcgaggaaccagaggggtacaatccgttcgaagaggacgaagatgaaagt
aatcctttcttcaactcataa
DBGET
integrated database retrieval system
