Apostichopus japonicus (Japanese sea cucumber): 139954939
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Entry
139954939 CDS
T10891
Name
(RefSeq) NPC intracellular cholesterol transporter 1-like
KO
K12385
Niemann-Pick C1 protein
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
ajj04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
139954939
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
139954939
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ajj02000
]
139954939
Transporters [BR:
ajj02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
139954939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
139954939
NCBI-ProteinID:
XP_071811059
LinkDB
All DBs
Position
17:complement(29502155..29534847)
Genome browser
AA seq
1303 aa
AA seq
DB search
MILRLPHSIFLISVTLLLFGFHKSQASPDNRNYKDGFCMTYGRCGTDTQTGKPIPCYYNG
PAFPLTDKGGLKILAELCPWMVAEKGETTYTCCDQAGLNTLLNNVQPAQQTLDRCPSCYR
NFLNLLCSTTCSPNQSVFMNVTETAPYTPAADAAVGEPFQGNLSVIAVDVYVEGAFANGM
YNACKNVNFPSTNQKVMSLYCGSYGAAHCSAQRWLDFIGSKSNGQTPFAFNYHLRNDSTP
EPLVFVPLNLTVHPCNEGVGNTSTPCSCQDCPKACPPVIPPPTPPAPCIIWFVDCFTFYI
FVSWVVFVLIFTLLDVLHSLLSSNPGHEKGKFNVGCQEAIGEFIDRSLRNMFHRLGLFVA
TNPFPVIFVSIVAVIGMACGMFMLTVITDPVELWSPPESEARLHKEYFDGKFGPFYRTEQ
LIITAPHTDFSIYQQYPYHNNITFGPVLNISILHQVLDLQNAIANLSVFYQPENRNISLQ
DICYAPLSPDNKNCTIVSVLNYYQNDHDMLDKIAKDKFFKASDFHDHFLSCTASPTALVD
NTYLHTPCVGTFGGPVFPWTALGGYDGENYNMATVLVITFPVVNYGPTDPRTARAAAWES
VYLDFLREYRNPNLSIAYQAERSVQDEIQRESTTDIYTIALSYLVMFGYVSIALGQFFSC
SRLLIDTKIMLGLSGVVIVFCSVASAVGALSYCGVPATLIVIEVVPFLVLAVGVDNIFIL
VQTYQREHKEGEARITHMARVLGEVGPSMLLTSSSESVAFSLGALSNMPAVKAFSLYAAT
AVFINFLLQITCFVALLTLDSLRQEKNRYEILCCFQDKKAGQVPVGQGLLQQFVENIYAP
ILLNKIVRWFVMVVFSFVFCMSITFLPKLSIGLDQRLSMPKGSYMLDYFDMELNYLNVGP
PVYFVVKGGYNYSTIENQNKLCGTAGCNVDSLSAQIFLASREPGYQHIAEPAGSWLDDYF
DWSKSGDSSKSCCRLYNGTDTFCPSLVDNSTCVACRNSTSRATPAEFVEFLPFFLEDIPC
IKCSKGGKAAYGSAVNFEDKAKTIIGASYFQSYHTVCRNSSDYIAAIARAKNISANITKM
LKDSTQIDNEDFEVYPYSIFYVFYEQYLTIYRDAAVNLSICTAAIFVITFLLLGCDFFSA
LISTFTIVMITIDLMGIMYLWGIELNAISVVNLVMSVGISVEFCSHITRAFAISVKESRV
GRAEHALAHMGSSVLSGITLTKALGIIILYFSKSQLFQVYYFRMYLSIVILGGTHGLIFL
PVLLSFIGPGLNKARLRKVLPPSSEQSPLLSDNSIQGDNYNSI
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgattttaaggttacctcattccatattcctcatttctgtgactctcttattatttggc
tttcacaagtcgcaggctagccccgataatcgaaattacaaagatggcttctgtatgacg
tacggtaggtgtgggacggacactcagacgggaaagcccatcccttgctactacaacgga
cctgccttcccgctcacggacaaagggggccttaaaatcttagcagagctgtgtccgtgg
atggtcgccgagaagggcgagaccacctacacctgctgcgatcaagctggtctgaacacg
ctgctgaacaatgtccaacccgcacaacagacgttggacagatgcccgtcctgctatcga
aactttctgaaccttctctgctcgaccacgtgcagccccaaccagagcgtattcatgaac
gtcaccgagacggccccgtacacaccggcggccgatgccgccgtcggcgaaccttttcaa
ggtaacctgtcggtgatcgccgtggatgtctacgtggagggcgccttcgccaacggcatg
tacaacgcgtgcaagaacgtcaacttccccagcaccaaccagaaggtcatgtcactctac
tgcggcagttacggggccgctcactgttcggctcagaggtggctggacttcataggcagc
aagagcaacggacagacgccgttcgccttcaactatcacctgcgtaacgactccacccca
gagccgctggtgtttgtacctttgaatctcaccgtacacccctgcaacgaaggtgtgggg
aacacctccaccccctgcagctgtcaagattgtcccaaagcctgccctccggtgatcccg
cctcctacacctccggcgccttgcatcatctggttcgtagactgtttcaccttctacatc
ttcgtcagctgggtggtcttcgtcctcatcttcactctgctggacgtcctgcattcgctg
ctctcgtcgaatcccggccacgagaaagggaaattcaacgtcggctgtcaagaggccatc
ggagaattcatcgacagaagcttgagaaatatgttccaccggctcggtctgttcgtcgcc
acgaatcctttcccagtcatcttcgtgagcatcgtggcggtgatcggaatggcgtgtggc
atgttcatgttaacggtcattacggatccggtcgaactgtggtcacctccagaaagtgaa
gcccgcctccacaaggagtattttgatgggaaatttggaccgttctatcgtacagagcag
ctgatcattacagccccacatactgacttctccatatatcaacagtacccctaccataac
aatattacctttggacctgtgttgaacattagcatcctacatcaggtcctagacttgcag
aacgcaatcgcaaacttgtccgtcttctaccaaccggaaaacaggaacatctccctgcag
gatatctgctatgctcctctctccccagacaacaagaactgcaccattgtcagcgttctc
aactattaccaaaacgaccatgatatgttggacaaaattgccaaggataaattcttcaag
gcttctgatttccacgaccattttctgtcctgtacagcatcccccactgctctggtcgat
aacacctacctacataccccctgtgtggggacatttggaggaccggtgttcccttggact
gctcttggtggatatgatggtgaaaactacaacatggctactgtgctggtgataaccttt
cccgtggtaaactacggaccaactgatccccgcaccgccagggcggcagcatgggaaagc
gtctatctggacttcctcagggagtacagaaaccctaacctgtcgatcgcttaccaggct
gagagatcagttcaggatgagatacagagggagagcaccactgatatatacaccattgct
ctcagctacctggtcatgtttggatacgtcagcatcgctctcggacagttcttctcgtgc
agtcgtctccttatcgacaccaagatcatgctcggcctctccggagtggtgattgtattc
tgttcggtggcctccgccgttggcgccctcagttactgcggcgtcccggcaaccctgatc
gtcatcgaggtggtcccgttcctcgttctcgcagtcggcgttgacaacattttcattctc
gtccagacctatcagagagaacataaggagggggaagctagaatcactcacatggccaga
gtcctcggtgaagtcggacccagcatgctcttaactagctcatccgaatcggttgcattc
tccctcggtgccttgtccaacatgcctgctgtgaaagcattttctttatatgccgctaca
gctgttttcatcaattttttgctacaaataacttgtttcgtggctctattgacgcttgat
tcgctgagacaggagaaaaaccgctacgaaatcctatgttgcttccaagataagaaagcg
ggccaggttccagtcggtcagggtctactacaacaatttgtggagaatatatatgcgcca
attttattgaataaaatagtcagatggtttgtgatggtggtcttctcttttgtattttgc
atgtccatcacattcctccctaagttgagcatcggtctagaccaaagactgtccatgcca
aagggttcgtacatgctggactatttcgatatggagctgaactacctcaacgtggggcca
cctgtctatttcgtggtcaagggcggctacaactattcaaccatcgaaaaccagaataaa
ctctgcggtacggccggttgcaacgtggactctctctccgctcagatattcctcgcctct
agggaaccaggataccaacatatagcggagccagcaggttcctggttggacgattacttc
gactggtccaaatccggggactcttcaaaatcctgctgtcgattatacaacgggaccgat
actttctgcccctccctcgtggacaacagcacctgcgtggcctgtagaaatagtacaagt
cgagcgaccccggcagaatttgtagaattcctgccttttttcctagaagacattccttgt
atcaagtgctccaagggaggtaaagctgcctatggttctgcagtcaattttgaagataag
gcaaaaaccatcatcggagcttcatatttccagtcgtatcataccgtgtgtaggaattca
tcagattacatagcagctattgcaagagccaaaaacatcagcgctaacatcaccaagatg
ctgaaggattcaacacagattgacaatgaggactttgaagtctatccttacagtatattc
tatgtgttctacgagcagtacctgaccatatacagagacgctgccgtcaacctctccatc
tgtaccgcagccatctttgtcatcaccttcttgctcctgggttgcgatttcttctcggct
ctcatcagcaccttcaccattgtcatgatcaccatcgacctaatgggcatcatgtacctc
tgggggatcgaactcaacgccatctcggtcgtcaatctcgtcatgtctgttggtatatct
gttgagttctgctctcacatcacaagagcgtttgccatcagtgttaaagagagcagagta
ggtagagcagagcatgccttagcacacatgggaagttcggtcttgagtggaataactctg
accaaagctctggggatcattattctgtacttctccaagtcacagctcttccaagtgtat
tactttcggatgtatttaagtatcgtgattctaggtggcacacacggactaatatttctg
cccgtgcttcttagttttattggaccaggactaaacaaggctcgacttaggaaggtacta
ccacccagcagtgagcagagtccattgctgtcagataacagtatccaaggggacaactac
aacagtatctaa
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