Apostichopus japonicus (Japanese sea cucumber): 139954954
Help
Entry
139954954 CDS
T10891
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139954954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajj03021
]
139954954
03036 Chromosome and associated proteins [BR:
ajj03036
]
139954954
Transcription machinery [BR:
ajj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
139954954
Coactivators
SAGA/TFTC/STAGA complex
139954954
Chromosome and associated proteins [BR:
ajj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
139954954
STAGA complex
139954954
TFTC complex
139954954
SAGA complex
139954954
SLIK complex
139954954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
TFIID_NTD2
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_HPS5
PROPPIN
Beta-prop_IP5PC_F
Beta-prop_WDR75_2nd
Beta-prop_Nup120_160
Cytochrom_D1
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
139954954
NCBI-ProteinID:
XP_071811079
LinkDB
All DBs
Position
17:complement(12481361..12508705)
Genome browser
AA seq
599 aa
AA seq
DB search
MKRVNSEVIHATVLDYLKRRNYVQDQSTESFSKKHLKLTESLQEFAMRTVMQRETGARNL
VSCDSCNASPGESTSQFANLATFVTGALPEYKSDIEQIISPVFVHLFLEMIYNGHKAEAH
SFYGKHQELIESLSYNKDLLQCLTEVMSSVDILNNPLLMTFRECKFKVEISHDALQYLLR
YLQSQDTSLILKVLNFHIHIEVKNGVSSASVPREEKEKGNNEGANHHHHPPGEVEDAFED
SAHLEQYAEELRKTLEGVRDGGSAAPSILLYTFLNAYQGLSCAKLSPRKELLVGGYEDSS
LRMWSTGEEKLRVRRKAVDVSKVFLSGDCITPDVEEATESSPSECHALRGHSGPVYGCCY
VPGSDLLLSCSEDTTIRGWRLSSATNAAIYRGHNYPVWDLDVSPSNFFFASASKDGTARL
WTTERNFPLRVYAGHMMDVDCVKFHPNCKYMATGSNDKSIRLWDINEAKSVRLFTGHRST
VVSLAFSPDGNFLASAGEDRRIKLWDLGSGSMVKEFRGHGDTVYSLCFSPDGSLLASGGI
DNSIRIWDARKNFAKPSEGQSSATSQELVKQFSTKSVHIHSLQFIKSNLLTAVGGTTHN
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtgttaactcagaagtcattcatgcaactgttctagactatctcaaaagacga
aattacgtgcaggaccaatccaccgagtcttttagcaagaaacacctgaagctgacagag
agtttacaagagtttgcaatgaggactgtgatgcagagagagacgggagcaaggaacctc
gtctcctgcgacagctgcaatgccagcccaggcgaatccaccagtcagtttgctaatttg
gcaacgtttgtcaccggagctctcccagagtacaagagcgacatagagcagatcatctcg
ccggtctttgtccatcttttcctggaaatgatttataatggccacaaagcagaagctcac
agcttttacggaaagcatcaggaactgatcgagtcactgtcgtataacaaggacctcctg
caatgcctgacggaagtgatgagttctgtggacatcctcaataaccccctccttatgacc
tttagagaatgtaaattcaaagtagaaatttcccatgatgccttgcagtaccttctacgt
taccttcagagccaagataccagtctgatcctaaaagtcctgaatttccacattcacatt
gaagtgaaaaatggcgtcagttccgcatccgtaccgcgggaagagaaagagaagggtaac
aatgagggcgccaatcatcatcaccatcctccaggagaggtagaggatgccttcgaagat
tcggctcacctggagcagtacgcagaggaactcaggaagacgctggagggagtgagagac
ggcgggtctgcagcgccctctatacttctgtatactttcctgaacgcatatcaaggtttg
tcgtgcgctaaactctcaccaaggaaagagctcctggttggcggatacgaggattccagt
ctacgtatgtggagcaccggggaagaaaaactgagagtgagaaggaaagcagtggacgtg
tcaaaggtcttcctttctggtgattgcataactccagatgtagaggaagctactgagagc
tccccatcagaatgtcatgccctgagaggtcattcaggcccagtgtacggctgctgttat
gttcctggctctgatctgctcctctcctgctctgaagatactacgatacgaggctggcgg
ctgagttctgcgaccaatgcagctatttacagaggccacaactacccagtttgggacctc
gatgtcagtccctccaatttcttctttgcatccgcatccaaagacggcacggcgaggctc
tggaccaccgaaaggaactttccactcagagtttacgccggacacatgatggacgtagat
tgcgtcaagtttcatcccaactgtaaatacatggcgacgggatcgaacgataaatctata
cgactctgggacatcaacgaagccaagtccgtccgcttgttcaccggtcacaggagcaca
gttgtttcgctagccttctccccggacggaaatttcctggcatctgcaggggaagacaga
agaatcaagctgtgggatctgggatcaggaagtatggtgaaagagttcagaggtcacgga
gatactgtctatagtctctgcttcagccctgatggtagcttgctagcttcaggtggcatt
gacaactctatacgaatttgggacgctaggaaaaactttgccaagccgtcagaaggtcag
agcagcgcaacatctcaggagttggtgaagcagttctcaaccaagtccgttcacatacac
agcctccagttcattaagtctaaccttctcaccgcggtcggtggaaccacccacaactag
DBGET
integrated database retrieval system
