Apostichopus japonicus (Japanese sea cucumber): 139958416
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Entry
139958416 CDS
T10891
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03040
Spliceosome
Brite
Enzymes [BR:
ajj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139958416
Spliceosome [BR:
ajj03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
139958416
Complex B
139958416
Complex C
U2 SnRNP specific factors
139958416
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GFIT
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NCBI-GeneID:
139958416
NCBI-ProteinID:
XP_071811581
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Position
18:20069900..20100373
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AA seq
776 aa
AA seq
DB search
MSYSRGGSSSRGMGYSGFSFYNRSKPRGMPYGGTVMGFEEPDLKIIMKKNRTEQEYFDAD
SDEEDASTSKHGRKRDDESEEEEEVEEDPLDAFMAGLNEEAAKAIQEVTEPAEKKTIEDK
KEKATRQDIDEMDDQESYFKYMEENPTAGLLVPEDEEIVEYDEEGYPVFIERSKIIDPLP
ELDHSQINYEDFSKNFYEEHSEISSMSFFDVVNLRKKLGIKVSGIDPPKPVSSFGHFGFD
DQLMRCIRKSEFSSPTPIQAQGVPIALSGRDIIGIAKTGSGKTAAFVWPLLVHIMDQREI
EKGEGPIGLICAPTRELAQQINMEVKKFGKAYNIHSACCFGGGNMWEQQKACAEGPEVVV
CTPGRLIDLVKKKSVSLERVTYLVIDEADRMFDMGFEPQVRSIADHVRPDRLTLLFSATF
RKKVERLARDILTDPVRVVQGDIGEANQDVTQVIEILPTQAEKWTWLLQRLVGFTSAGSV
LIFVTKKINAEELTSNLKVNDFKVGLLHGDMDQYDRNNIIGAFKKREIPIMVATDVAARG
LDIPSIKNVVNYDVARDIDTHTHRIGRTGRAGEKGTAYTLIVKKDVYFAGDLVRNLEGAN
QQVPKRLVDLAMENPGFRKSRYKAGKAKKKNKDGRGLGYRERPGLGSTDTSDYTTEIAES
LPESSQTETPDADKSGFLGAEDPTQGVSSLYSSRLAAMKNAFSSQYKSHFVAASANPVNN
TWASNKLVKQQPSPKSVITPPVPVRRAGDHNKRAFKEPELPKPKSSKKVRKSRWDS
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgagctacagcaggggtggcagcagttcaagagggatggggtacagtgggttctctttc
tacaaccgtagcaaaccacgagggatgccatatggtggtactgtcatgggttttgaggaa
cctgatctgaagattattatgaagaaaaacagaacagaacaagaatactttgatgctgat
agtgatgaagaagacgcatctacatccaaacatggacgcaagagagatgacgagagtgag
gaggaggaggaggtggaggaagatcctttagatgcatttatggccggattaaatgaggag
gcagcaaaagcaatacaagaagtaacagagcctgctgagaagaaaaccatagaagacaag
aaggagaaagctacaagacaggacattgatgaaatggacgatcaggaatcatatttcaag
tacatggaagaaaaccctactgcaggattactggtaccagaggatgaagaaattgtagaa
tatgatgaagagggatacccagtctttattgaaaggtccaaaattattgacccacttcca
gaacttgaccactcacagatcaactatgaagacttcagcaagaatttttatgaagagcat
tcagaaataagctcgatgtctttctttgatgtggtaaacctgaggaaaaagcttggtata
aaggtatctggcattgaccctcccaaaccagtatcgagctttggccattttggattcgac
gaccagctgatgcgttgtattcggaagtcagagttttcaagcccaacacctattcaagca
cagggtgttccgatagctttaagtggaagagacatcattggtatcgccaagactggaagt
ggcaagacagctgcatttgtatggcctttgcttgtgcacatcatggaccagagagaaata
gagaaaggggaaggtcccattggcttgatttgcgctcctacccgggaattggcccaacag
ataaatatggaagtcaagaagtttggcaaagcatacaacatccacagtgcttgttgcttt
ggaggaggcaatatgtgggaacaacagaaagcctgtgcagaaggaccagaagtagtagtc
tgcacacctggccgtctgatagacttggttaagaagaaatctgtaagtctggagagggta
acttacttagtcatagatgaagcagatcgtatgtttgatatgggctttgaaccacaggtg
agatcaattgcagaccatgtgcgtccagacagacttaccttactgtttagtgcaacattt
cgaaagaaggttgagcggctggccagggacatcttgacagatcctgtaagggttgttcaa
ggagatataggggaggctaatcaagatgttactcaggtgatagaaattcttccaacgcag
gcagaaaaatggacttggcttctccaaagactggtcggtttcacatctgctggtagcgtt
ctcatctttgtcacaaagaaaatcaatgccgaggaactcactagtaacttaaaagttaat
gactttaaagtgggtttactacatggtgacatggaccagtatgacaggaacaacatcatt
ggagcattcaagaaacgggaaataccaataatggttgcaactgatgttgctgctcgtggt
cttgacattccttccattaagaatgttgtcaactatgacgttgctagagatattgacaca
catacacatcgaattggcaggacaggacgtgctggagagaagggtacagcttataccctg
attgtcaagaaggatgtatactttgcaggagacttggtcaggaatttggaaggtgccaat
caacaggtacccaagagacttgttgacctagctatggagaatccaggattccgtaaatca
aggtacaaagccggcaaggcaaagaagaagaacaaagatggacgaggtttgggatacaga
gaacggccaggcctaggcagcaccgatacctcggactataccacagagattgctgaatct
ttacctgagagtagtcaaacagaaaccccagatgctgacaagagtggtttcctaggggca
gaggaccctactcagggagtcagcagtctctacagtagcagattagcagctatgaagaat
gctttctcatctcaatacaagtcacattttgtggctgccagtgccaaccctgtaaataat
acttgggcgtctaacaagctggtcaaacaacagccttcaccaaagtctgtgattacccca
ccagtacctgtaaggagagctggtgaccataataaaagagcattcaaagaacctgaacta
ccaaaaccaaagtcatccaagaaagtaaggaagagtcgatgggattcttga
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