Apostichopus japonicus (Japanese sea cucumber): 139958677
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Entry
139958677 CDS
T10891
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2-like isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
139958677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajj03021
]
139958677
Enzymes [BR:
ajj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
139958677
Transcription machinery [BR:
ajj03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
139958677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
139958677
NCBI-ProteinID:
XP_071812042
LinkDB
All DBs
Position
18:10482459..10524741
Genome browser
AA seq
1148 aa
AA seq
DB search
MERPPKPTMGSRQFSKLSTGEYGVPPKQQNEVLQALVRPHVESFNFVLKEGLNLVLQNLS
PVQFVLANGEKLSVGLKDASIGKPIISKGNIYAMDHKVYPSECRQSGKTYRAPLTARVHW
SSSSGECGTWEGILGEIPIMVKSLHCNLHQLSPIQLIQKKEEAEEMGGYFIINGIEKCIR
MLVTPRRNYPTAVLRDKWKSRGKFYTEFGVTMNCVSKDQSRSTLILHYLSNGTAVLSFIH
RKEIFFIPIMIVLKSLFDANDEQMYADLIRGREEDTYFVGCVLGMLRNLQHLKLFHQKAA
LQYVGERFRIKLGLPDWCTDEETTETLLQKCICIHLTNKRHKYDCLVLMTQKLFAFARGQ
CCQENPDSPMNHETLLPGHLYLSVLKEKLEGWLTNFRYVIEKKTNANRNQITHQVTPALI
NQCLKLTSGLTRPMEYFLATGNIVSPTGLGLMQTSGFSVVADKLNFMRYLSHFRCLHRGS
YFVEMRSTSARKLLPEAWGFLCPVHTPDGTPCGLLNHLSASCQVTTNQPKVAPLLQVLYA
MGMLALDAPQIALWGETYQVVLDGRVVGSLPKGGAESIVAALRVMKCTGEQEIPKSLEIC
LVPITGKKTQYPGLFLFTTPARLLRPVVNLMTENEELIGTMEQVYLNVSVNAKEVIPEVT
SHMEVTEDGILSVAGSLTPFSDFNQSPRNMYQCQMGKQTMGFPCHVLPYRIDNKMYRLQT
AQTPVVRPKAYDIIDMDNYPLGTNAIVAVISYTGYDMEDAMVLNKAALDRGFAHGQIYKT
EVIDLKKHLKGSKSNEVTYAFGCDPSDPRAMDKLDSDGFPPPGTIIEPGDPLYGYVQLST
GQSDISKYKGSETGIVESVKVVGNDMGNEISQRAYIQLRIQRNPVIGDKFSSRHGQKGVC
SLKCPQEDMPFTDSGMTPDIIFNPHGFPSRMTIGMMIESMAGKSSCLHGLCHDATPFTFS
EKNTAVEYFGKCLTKAGYNYYGTETMYSGTSGVELEAEIFIGVVYYQRLRHMVSDKFQVR
STGPIDLLTHQPVQGRKRAGGIRFGEMERDSLLAHGTSFLLHDRLMNCSDKTLTHVCKKC
GTLLGISLETPQADFAVSERMLGNNLRQWTCAICCSSEDLEAIYLPYVFRYLVAELCAMN
VKTVIEVK
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggccacctaagcctacaatgggatctcgtcagttttcaaagctttccactggc
gagtatggcgtgcccccaaaacaacaaaatgaagtacttcaagctcttgtgaggcctcat
gtcgaatctttcaactttgtactaaaagaaggcttaaatcttgttctgcaaaacctatct
cctgtacaatttgtcctggcaaatggggaaaaattatcggttggattaaaggatgcatct
attggtaaacccatcattagcaaaggtaacatttatgccatggaccataaagtataccca
tcagaatgtcgtcagagtgggaagacatacagggcccctcttactgctagagtgcactgg
agtagtagctctggagagtgtggcacttgggagggaatccttggtgaaatcccaatcatg
gtgaagagcctacattgcaaccttcatcagctgagccctatacagttgattcagaagaag
gaagaggcagaggagatgggaggttactttatcatcaatggtatcgagaaatgtatcaga
atgctagtaacgccaagaagaaattatcccacagctgttctaagagataaatggaagtca
agagggaagttctacacagagtttggagtgacaatgaactgtgtcagtaaagatcaatct
agatctacacttatccttcattacctcagcaatggtacagcagtcttgagtttcattcat
cgaaaagagatcttctttattccaataatgatagttttaaagtctctatttgatgccaat
gatgagcagatgtatgcagacctgattagaggtagagaagaggacacatattttgttggg
tgtgttttgggaatgttaaggaatttacaacatttgaaactattccatcagaaggcagct
ttgcagtatgttggagaaagatttcgcatcaagcttggtcttcctgactggtgcacagat
gaagagacaacagaaactttgctccagaaatgtatctgcatccatttgacaaacaaaagg
cataaatatgactgtctggtattgatgacacaaaagttgtttgcatttgctagaggtcag
tgctgtcaagagaatccagatagtccaatgaaccatgaaacattactcccaggacatttg
tatctctctgtccttaaggaaaaactagaaggttggctcaccaactttcgctatgtaatc
gagaagaaaaccaatgcaaatcggaatcaaattacacaccaggtcacaccagctttgatc
aaccagtgtttgaaattgacctctggcctcacaagaccaatggaatatttccttgcaaca
ggaaatattgtgtcaccaacaggccttggtttaatgcagacgtctgggttttctgtggtt
gctgataaactgaacttcatgaggtacctctctcattttcgatgtcttcatcgtgggtcc
tattttgttgaaatgagatcaacttcagctcgaaagcttctcccagaagcctggggcttt
ttgtgtcctgtccacacccctgatggtaccccatgtggactactgaatcatctttcagct
tcgtgtcaggtcactaccaatcaaccaaaagtagcaccccttttacaggtgctatatgcg
atgggtatgttggcactagatgcacctcaaatagccctctggggtgagacataccaagtt
gtcttggatggtcgagtggtgggatcgttaccaaaaggaggagcagaatctatcgttgct
gccttgagggttatgaaatgcacaggagaacaagaaattcctaaaagccttgaaatttgt
ttggtaccaattactggcaagaaaactcagtaccctggactgttcctcttcacaactcct
gcccgactcctgagaccagttgtaaacctcatgacagaaaatgaagagctgattggtacc
atggagcaggtgtatctcaatgtatctgtgaatgcaaaggaggtcataccagaggtcaca
tctcacatggaagtaactgaagatggcatactgagtgtagctggcagtttaaccccattc
tctgatttcaatcagagtccaagaaatatgtaccagtgtcaaatgggaaaacagacaatg
ggctttccatgtcatgtgttgccttatcgaatagataataagatgtacaggctgcagact
gctcaaactccagttgttagaccaaaagcctatgatatcattgacatggacaactatcca
ctgggaaccaatgccattgtagcagtcatttcatatactggctatgacatggaagatgct
atggtgttaaataaagctgccttggacagaggctttgctcatggacaaatctataaaact
gaggtcattgacttgaagaaacaccttaaaggatccaagagcaatgaggttacttatgct
tttggatgtgacccaagtgacccaagagcaatggataaattagattcagatggcttccct
cctcctggtactatcattgaaccaggagaccctctatatgggtatgtacagcttagcact
ggacagagtgatatttccaagtacaaaggttctgagaccggaattgtagagagtgtgaaa
gtggttggtaatgatatgggaaatgaaataagtcagagggcctacattcagttgagaatt
cagagaaatccagtcataggtgacaagttttccagtagacatggacagaagggtgtgtgc
agtcttaaatgtccccaggaggacatgccatttacagacagtggtatgaccccagacatt
atattcaaccctcatggattcccatcccgtatgacaataggtatgatgattgagagcatg
gctggtaaatcaagttgtcttcatggactatgtcacgatgccactccatttacattctct
gagaagaatactgctgttgagtattttggaaaatgtctcactaaagctggctacaattat
tatggtactgagaccatgtatagtggcacatcaggtgtggaactggaagctgaaatattc
attggtgttgtctattatcaaaggctgcgacacatggtgtcagacaagtttcaggtccga
tctaccggacccattgaccttttgacccatcaacctgtccaaggtcgtaagagagcaggt
ggcatccgatttggtgagatggaaagagattccttattagctcatgggacatcttttctc
ctacacgataggttgatgaactgttctgataagacattgactcatgtatgtaagaagtgc
ggtactttactgggcattagccttgaaacaccacaagctgatttcgctgtcagtgaaaga
atgttggggaacaatttacgacagtggacttgtgccatctgttgctcatcagaagacttg
gaagctatctacctgccatatgtctttcgatatctggtggctgagttgtgtgcaatgaat
gtcaaaactgtaattgaagttaaatga
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