Apostichopus japonicus (Japanese sea cucumber): 139960281
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Entry
139960281 CDS
T10891
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1-like
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ajj04040
]
139960281
Ion channels [BR:
ajj04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
139960281
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Motif
Other DBs
NCBI-GeneID:
139960281
NCBI-ProteinID:
XP_071814637
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All DBs
Position
19:complement(922533..950319)
Genome browser
AA seq
1269 aa
AA seq
DB search
MSRKKSTEPKILRFVMDKDQRLLPSLLYGSSLGTKGGTVSPTLVCETNPGVNGGTVSPSL
VYDSSLEAKGATVATSLIYDSSLEAREGTVSPSLASDTNLGVMGGKVSPSFTYDSGPEAH
QGGSWSPSVFFDSSLEEGTDASESTPIRHQNERKALQERYNQISPTALRNLNKAKTIGFV
AMSYENTKKKRKKTKFERKRSKVGSIGSNDVEFSRNKADQDSEDSTEDIFGSLVSMVTVG
RGNNVERKHSIHECIRKRSFRHVKKCIEDDCSNVNRTNKQGMFPLHISAQLGYLDIVQLL
LDNGADVDIATKNEGSTSLHVCSKFNHIEVARALILHGCNVDAIGTNGDTALHIACTHGY
LEIAKLLLDSGASVNLTNEDQQTALHRSSIHGSVEMMRLLISRGADILSKDCNRNTPLIF
ACLSGHLKLADILIAHAAEHGFSVPDYLSKQNIRGETALHAGTTKRHTEIVQMLLQKGSD
VTSVKVNGQSALHIAAMNGSRDIARNLISHGALLTLADNDNMSPLHRAALHNQVETMKLL
LQEGCPPDICDEDSFTPLMCAAWKGNCEAGGILLKEGSAIETLDYNQKNCLHLAVEMDHV
EFVKMLLRHVNSVNIINATSKMEWTPLHYAAENGNVEIMRCLLDAGANLTCKDHQVKSPL
HIAASHGKLKFTAAALHEQPDTINESDRRGMTPLLLASKHGHHHVVRYLLKTGADISSRN
SHEMTALSLAAMKGNVHVISVLLQFHSNVNAQDKDWNTPLHICCIYNQDDAAHLLLHANA
NFCILNRKRHSVLDLAANYKREAIAAAILNNKNWEKAMNLRDSEGNTPMNMLIEKLPSCA
EIVFNKCMRYSHTDQSHPDYSVTYDFKYLDPGPDDVSTLKQKKRYFALNTIVDLKRENLA
KHEMVQTILKLKWEKLGQTSTGVAHTLYLVFVLVYAFFIQQIIDNELPSASWDQGGCPVF
NESDPMIGPHINRLENGRYVYSSMGVWVLESYLILYIVLEGIHKCYEIYIKRLDFCMDLS
NWNDLIAFTATLIFILPPGRVPCAFQWNCGVLGILLSYLRFITLLQRLDYVGIYVTMFWT
TVKSLLKAMAVYVLFMIAFAFTFRITFGKQFSYSTELRSFLTTFAMTMGEFGRENIFSSE
LSIFEASSYILFLLFLFTMPLVLVNLMIGISIGDIEAIRASSDIKRMSLQVDVTYSLESK
LPVFLQRKVYSAMYVDYPNKPRLGLLTKVRHFLIGEPSSGFLSDEVTDDNSLNESIGDIK
NCVDTQKDL
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtaagaaatcaactgagccgaagatactcagatttgttatggacaaagatcag
agattgttgccatcgttactctatggttccagtttagggaccaagggaggtaccgtgtca
cctacgcttgtctgtgaaaccaatccaggggtcaatggaggtacagtgtcaccctcgctg
gtctatgactccagtttagaagccaagggtgctacagtggcaacctcgctgatctatgat
tcgagtctagaggctagggaaggtacagtatcaccatcgctagcatctgatactaattta
ggggtcatgggaggtaaggtgtcaccctcgtttacctatgactccggtcctgaggctcat
cagggaggtagttggtcgccttcggtattctttgattctagtttagaggaaggaacagat
gcctcagaatcgacacctattcgacatcagaatgagaggaaggcactacaggagagatac
aatcaaatatctccgacggctctccgtaatctgaacaaagcaaagaccatcggcttcgta
gccatgagctacgaaaacactaagaagaaacgaaagaagactaaatttgagaggaagaga
agtaaagtgggatctattggtagcaatgacgtggaatttagtagaaacaaagccgaccaa
gattccgaagactcgacggaggatatcttcgggagtctcgtttccatggttacggttggt
agagggaacaacgtggaacgcaaacatagtattcatgaatgtatccggaagaggtcgttt
agacatgtcaagaaatgcatagaagacgactgcagcaatgttaatcgaactaataaacaa
ggcatgtttcctcttcatatttctgcgcagcttgggtatttggatattgtgcagttatta
ctagacaatggcgccgatgtagatatagctactaaaaatgagggcagtacatccctccat
gtatgctccaagttcaaccatatagaggtggctcgtgctttaattcttcatgggtgtaac
gtggatgccattggtactaacggagacacagccttacatatagcttgcacacatggatac
ctagaaatagcaaagctgttacttgattcgggtgccagtgtgaacttgacgaacgaagat
cagcaaactgccctgcatcgttcatcgatccacggcagtgttgaaatgatgcgacttctg
atctccagaggagctgacattctttcaaaagactgtaacaggaacactcctttaatcttt
gcttgcttgtcaggacatttgaaacttgccgatattctgattgcacatgctgctgagcat
ggcttctccgttcctgattacctcagtaaacagaatataaggggcgagacagctttacat
gcaggaacaacgaaaagacacaccgagattgtccaaatgctgctgcaaaagggaagtgac
gtcacatcagttaaagtgaacggtcagagtgctcttcatatagcagctatgaatggttcg
agggacatagctagaaaccttatcagccacggggcgttactaacgcttgctgacaatgac
aacatgtctcccttacatagagctgctttacataatcaagtggagacaatgaaattatta
ctgcaagagggatgtccacctgacatctgtgatgaagacagcttcacaccattaatgtgt
gctgcatggaaaggaaactgtgaagcgggcgggatactgttaaaggagggctctgcaata
gagacattggattacaatcagaaaaactgcttacacttggctgttgagatggatcacgtg
gagtttgttaagatgttgctaagacacgtaaattctgttaatataatcaatgcgaccagc
aagatggaatggactcctcttcattatgctgctgaaaatggaaatgtggagattatgcga
tgtctgttggatgcgggagcaaatttgacgtgcaaagaccaccaagtaaaaagccctcta
cacatagctgcgtcacatggtaaattgaagttcacagcagcagccctccacgagcagcct
gacacgataaacgaatctgataggagaggaatgacccccctcctgctagctagcaaacac
ggccatcatcacgtggtacgctatctactgaagacgggagcagacatatccagcagaaat
tcccatgaaatgacagctctgtctctggcagctatgaagggtaacgttcacgtgatcagt
gtactcttgcagttccattcgaatgttaacgcacaagataaagactggaacaccccgctc
cacatatgttgtatttacaaccaggacgatgcggcccatctcctgctacatgctaatgct
aacttctgcattctgaaccggaagcgacattcggtgttggatttagcagccaattacaaa
cgtgaggcaatagcagccgccattctcaacaacaaaaactgggagaaggccatgaaccta
agagacagtgaaggaaacacgcctatgaatatgttaatagaaaaattaccttcgtgtgca
gagattgtcttcaacaagtgtatgcggtattcgcatacggaccaatcacatcccgattac
tcggtgacgtatgacttcaaatacttagatcctggccccgatgacgtcagcaccttgaaa
caaaagaaacgatacttcgcactcaacacgatcgtggacctcaagagggagaatctggcc
aaacatgagatggtgcaaacaattctgaagctcaaatgggagaagttgggccaaacaagt
actggtgttgcacacactttgtatctggtcttcgttctagtttacgctttcttcattcag
caaataatagacaacgaactcccgtcagcttcttgggatcaaggtggttgcccagtattt
aatgagtctgatccgatgataggtcctcatattaaccggttggagaatggacgatatgtt
tacagctcgatgggtgtatgggtccttgaaagctacctaatcttgtacattgttttggaa
ggtatccataaatgttatgaaatttacataaagagattagacttttgtatggatttatcc
aactggaatgacttaatagcttttaccgcgaccctcatctttattctcccaccgggccgc
gttccatgcgcattccagtggaactgcggcgtgcttggcatcttgttgtcatacttacga
ttcataacgttacttcagagactagactatgtagggatctacgtcacaatgttctggaca
actgtgaaatctttattaaaggctatggctgtgtatgttctcttcatgattgcatttgct
ttcacattccgaataacatttggtaaacaattctcttacagtacagaactgcgtagcttt
ttgacaacattcgctatgacgatgggggaattcggaagggagaacatattttcttcggaa
ttatcaatattcgaagctagctcttatatcctatttcttctgtttttgtttaccatgccg
ctagtcctcgtcaatctaatgatcggtatctccattggtgacattgaagccattcgggcc
tcctccgacatcaagaggatgtcgctgcaggttgacgttacatattccttggagagcaag
ctgcctgtttttcttcaaaggaaggtatacagcgctatgtacgtcgactatccgaataaa
ccacggttgggattgctcactaaggtccgtcacttccttatcggtgaaccatcctctggg
tttttaagcgatgaagtaactgatgataacagcctaaatgaatcgattggagatattaaa
aactgtgtcgacacccagaaagacttgtaa
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