KEGG   Apostichopus japonicus (Japanese sea cucumber): 139960639
Entry
139960639         CDS       T10891                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ajj  Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03030  DNA replication
ajj03410  Base excision repair
ajj03420  Nucleotide excision repair
ajj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ajj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    139960639
   03410 Base excision repair
    139960639
   03420 Nucleotide excision repair
    139960639
   03430 Mismatch repair
    139960639
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ajj03032]
    139960639
   03400 DNA repair and recombination proteins [BR:ajj03400]
    139960639
Enzymes [BR:ajj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     139960639
    6.5.1.6  DNA ligase (ATP or NAD+)
     139960639
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     139960639
DNA replication proteins [BR:ajj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    139960639
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     139960639
DNA repair and recombination proteins [BR:ajj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     139960639
   NER (nucleotide excision repair)
    Other NER factors
     139960639
   MMR (mismatch excision repair)
    Other MMR factors
     139960639
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C PuR_N
Other DBs
NCBI-GeneID: 139960639
NCBI-ProteinID: XP_071815263
LinkDB
Position
19:complement(17667451..17701147)
AA seq 962 aa
MAQRSIMSFFGPRQKAAQEKEKAVENSDKVERSPLKPINGGSGKDEDETPKKKMRRLLDS
DDEEDETVKANSEEEESKKITSPVTPSQSSPSSSKEDRTPPSSATVSSSGGIQKRKTARK
HMRKSPKQAISPKVEEESKPETKQTTPSEKDKKVTEEEAITSPDSKMETSPTITTTKNQK
TKTPKSSESAKKKTAKKHMKRKTKESSPSDDKSSKVASLETTPTRGPSEPAQKRLKAVST
DEDVPAPQEVATPSKASEINIKDEDKDKDEKEIKPEATEEQENSDSKTSTPSRDAKPKKQ
AFAWLGKKSEEKDAASSYKPGVSDYHPVDNACWKKGDKVPYLALANTLEMIEETSSRLKI
CETLADYFWSVILLSPEDLISSVYLCLNKLAPAYEGVELKVGEGVLIKAISAATGRATAT
LKAEANEKGDLGIVAQTSKCNQRMMFAPPKLTLDNTFKKLREIANFSGNASMSKKVDVIK
AMMIACRGCESKYIIRSLTGKLRIGLAEQSVLVALGHAVALSENKNVTSKKKITDSVKKE
MEEASKLVKTAYCELPSYDAIIPAILEHGVAELPKHCKLTPSVPLKPMLAHPTKGVSEVL
NRFQEMAFICEFKYDGERAQIHILESGEVHIYSRNQEDNTSKYPDVIARIPKFKKDSVKS
AIIDSEAVAWDTEKKQILPFQILSTRKRKDAAIDDIKVQVCIFPFDLLYLNGEALVRKPL
RERRDLLLEHFQEVEGEFVLAKSKISSDIEDIQMFLDESMKGNCEGLMVKTLDAEATYEI
SKRSHNWLKLKKDYLEGTGDTLDLAVIGGYHGRGKRAGTYGGFLLACYDEESEEYQSICK
IGTGLKDDELEQHSKFFADHILEKPPSYYRFDSAHTPDHWFDAVQVWEVKAADLSISPVH
KAGLGLVDPCKGISLRFPRFLRIRDDKKPEEATSANQVADMYKSQDQIKNQTPEAVREED
FY
NT seq 2889 nt   +upstreamnt  +downstreamnt
atggcccagcgctcaatcatgtctttcttcggcccgaggcagaaagctgcccaagaaaaa
gaaaaggctgtcgaaaatagtgacaaggtggaaagatcccctttgaagcctattaatgga
ggctcagggaaagatgaggatgaaacaccaaagaagaagatgaggagactgctggacagt
gacgatgaggaagatgaaaccgtcaaagctaacagtgaagaagaggagtcaaagaagatt
acatctcctgtgacaccgtctcagagttctccgtcatcttctaaagaagataggactcca
cccagcagcgcaaccgtctcttccagtggaggaatccaaaagaggaaaacagctcgtaag
cacatgaggaaatcaccgaaacaggcaattagtccaaaggtggaagaagaaagcaagccg
gaaacaaaacagacaacaccatcagaaaaggacaagaaagtcacagaagaggaagcaatt
acctctccagattctaagatggaaacatctccaacaataacaacaacgaagaatcagaaa
actaaaacacctaaaagctctgaatctgcaaagaagaagaccgctaaaaaacacatgaag
agaaagacaaaagagagcagtccatcagacgataaatcctccaaggtcgcaagcctcgaa
acgacccccaccagaggaccgtccgaaccggcccagaaacgacttaaagctgtgtctaca
gacgaggatgtccctgcacctcaagaagtagccacacccagcaaagcatctgaaattaac
atcaaagatgaagacaaagacaaagatgagaaagaaattaaacccgaagcaacagaggaa
caagaaaattctgattcaaagaccagtacaccatcacgagatgcaaaacctaagaaacaa
gccttcgcttggttaggcaagaaatctgaagagaaagatgcagccagtagttacaagcca
ggtgtgtctgactatcatcctgtcgataatgcttgttggaaaaaaggagacaaagtccca
tatctagctctcgcaaacactctagagatgatagaagagaccagcagccgtctgaagatc
tgtgagactctggccgactatttctggtcggtgattctactctctcccgaagacctgatt
agttctgtgtatctctgtctgaacaaactcgcaccagcttatgaaggagtggaactgaaa
gtaggagagggagtcctgatcaaagctatttcagctgctacaggacgtgctacagcgact
ttaaaagcagaagcaaacgagaaaggagaccttgggattgttgcgcagacaagcaaatgt
aatcaacgaatgatgtttgctccacctaagttgaccttggacaacaccttcaagaagctt
agagaaattgccaactttagtggcaatgcttccatgtctaagaaggtcgatgtcatcaaa
gccatgatgatcgcatgtaggggatgtgaatctaaatacattatcaggtctctcactggc
aaactcaggataggactagctgaacagtcagttctggtggcccttggtcatgcagtggcc
ctctcagaaaataaaaatgtcacgagtaagaagaagataactgacagtgtcaagaaagaa
atggaggaagcatcaaaacttgtcaaaacagcatattgtgagttgccttcatacgatgca
atcattccagcaattctagagcacggagttgctgagcttccaaagcattgtaagctcacc
cctagtgtacctctgaagcccatgttagctcaccccaccaaaggagtcagtgaagtcttg
aatcgatttcaggaaatggcattcatatgtgaatttaagtatgatggagagagagcacag
attcacatactggaatcaggtgaagttcacatttacagccgtaaccaagaagacaataca
agcaaatacccagacgtcatcgctaggataccaaaattcaaaaaagattccgtcaaatca
gccattattgattctgaagctgttgcctgggatacagagaaaaagcagattttacctttc
cagattctaagcacaagaaaacggaaggacgcagcgattgatgacattaaagtccaagtc
tgtatctttcctttcgatttgctctatcttaacggagaggctcttgtcaggaaaccattg
cgtgagagaagagatcttcttctagagcacttccaggaggtcgagggagagtttgtcctg
gctaaatccaaaatatcttcagatatcgaagatattcaaatgttcctggatgagtcgatg
aaaggtaattgcgagggactgatggttaagaccttagacgctgaagcaacctacgaaata
tcaaagagatctcacaactggctcaagctgaaaaaggattaccttgaaggtacaggagac
acactagacctggctgtgattggtggttaccatggtaggggtaaaagggctggaacctac
ggtggttttttgttagcctgctatgatgaggagagtgaagagtatcaatctatttgtaag
atcggtactggactgaaagatgacgaactagaacagcacagtaaattctttgcggaccac
attttggagaaaccgccgtcttattatcggttcgacagtgcacacactcctgaccactgg
ttcgatgcagtccaggtgtgggaggtgaaagctgctgatctgtccatatcacctgttcat
aaagctggcttaggattggtggacccgtgtaagggcatatcacttcgttttccacgtttc
ttgaggattcgagatgataagaagcccgaagaagccaccagtgctaatcaggtcgcagac
atgtacaagagtcaggatcagatcaaaaaccaaacaccagaggctgtcagggaggaggat
ttttattga

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