Apostichopus japonicus (Japanese sea cucumber): 139961308
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Entry
139961308 CDS
T10891
Name
(RefSeq) nibrin-like
KO
K10867
nibrin
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
139961308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ajj03032
]
139961308
03400 DNA repair and recombination proteins [BR:
ajj03400
]
139961308
DNA replication proteins [BR:
ajj03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
139961308
DNA repair and recombination proteins [BR:
ajj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
139961308
BRCA1-C complex
139961308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NIBRIN_BRCT_II
Nbs1_C
BRCT
RTT107_BRCT_5
BRCT_2
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
139961308
NCBI-ProteinID:
XP_071816540
LinkDB
All DBs
Position
3:complement(5774261..5802977)
Genome browser
AA seq
652 aa
AA seq
DB search
MPLGSSVFLKHGDNVTFGALNSNSWRVDYEPMVVACSGVPGRDKQELKRQVSKLGGHILS
EWTKDCTLLVMREINVTAKVVGALVTCRSIVTPSYVSECLEALSVEGGSPPDPKRFLPPV
VERAINQDESLFEMKLERKTMLQGKTFVFLSQKQHKRLCSVIELAGGMTLLYSPDTCKPT
LLQDQHTCVLQSELTDHTQAPAAVTQEVENILKRKQLRLIGEAELGLAVLTASTSVYCNP
SIAKEGVKLVNCMKDSQFINISTQKVLVTDTQAPETSHAITSAGQRGQGKAETVQPKFEI
PMQRTLSLSNRKDVKGEGTLMAGSLNSKSIVSETDDSEDPFAESARAKRRAIKRLLSPEV
AVASSSKSVEESTAKKRIKVEEPSEEASVPSARGTVIATDAQEAVRPVSAGGETAAHPPV
KIKEEPQEIAGGHVDTNGNHRVAVKRDVTEIVTNDAPGDVVEEVGSQSLGGDSESSQSQW
RKNKRRRRLLSEEEDNGHDARVVDESSVSEVSVGGEATTLPSLPGFISKKRRPGALVKEE
EGFVFEPDLPKQLVVMEIVSLIVSKPAAKNPGKKSRNGHPVKNYKNFKKSSYAGQRILPQ
IIGGSDLVVHHHMQSQASQDMFLGDSRSSDIDRAEALADELFSVEPRGRRGR
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttggcagctcagtcttcctgaaacacggagataatgtgacattcggtgctctt
aattcaaactcgtggagggttgactacgagccgatggtcgtagcatgctctggtgtgcct
ggaagggacaaacaagagctcaagagacaggtatctaagctagggggacacatcttatcg
gagtggaccaaagactgcactctgcttgtcatgagagagattaatgtgactgcaaaggtg
gtcggtgcccttgtgacatgtcgtagtatagttacaccgtcctacgtcagtgagtgtttg
gaagcgttgtctgtcgagggaggatcaccacctgatcccaaacgattcctgcccccggtt
gtggagagagccataaatcaggacgaatctctcttcgagatgaagttagaaaggaagacc
atgctccagggaaagacgtttgtgtttttgagtcagaaacagcacaaaaggttatgttct
gtgattgaattagctggtggcatgacattgttatactcacccgacacctgtaagcccacg
ctgctacaggaccaacatacctgcgtccttcagagtgaacttacagatcacacgcaggcg
ccagcggccgtcactcaagaagttgagaatattctgaagaggaagcagttacgactgatc
ggagaggccgagctgggtctggcggtgctgacggcctctaccagcgtttactgcaatcct
tccatcgcaaaagagggtgtgaaacttgtcaactgtatgaaagacagccaatttatcaac
atctctactcagaaggttctggtaacagacacgcaagcccctgaaacctctcatgccatc
acatcagcaggtcaaaggggacaaggcaaagctgagacggtacaaccaaagtttgaaata
ccgatgcagaggacactctcactcagcaacaggaaagatgttaaaggggaaggaacattg
atggcaggctccctgaattccaaaagcatcgtatctgagaccgatgattccgaagaccct
ttcgctgagtccgctagagcaaagaggagggcgataaaaagacttctctcccccgaggta
gctgttgcctcttcttctaaatctgtggaggaatcaactgcaaagaagaggattaaagtg
gaggaaccatcagaagaggcatcggtcccatctgccagagggacagtcattgccaccgat
gcccaagaggcagtccggccagtctctgctggtggagagacagcagcgcacccacctgtg
aagataaaggaggaaccacaggaaatagctggaggacatgttgatactaatggcaatcac
agagtggcagtcaagagggacgtcacagaaatagttaccaatgatgcacctggtgatgtg
gtcgaagaggtaggctcccagtctcttggaggggatagtgagagtagccaatcacaatgg
aggaagaacaaaagaaggaggagacttctctcagaggaagaagacaatggccacgatgca
agagtggtagatgagtcatctgttagtgaagtatcggttggaggagaggcaacgactcta
ccgtctcttcctggtttcatctcaaagaaacgccgaccaggggcgctggtcaaagaggag
gagggattcgtctttgagcctgacctaccgaaacagttggtggtgatggaaattgtctct
ctgatagtgtccaaaccggccgctaagaatcctgggaagaagagcagaaatggtcatccg
gtcaagaactataaaaacttcaagaagagtagctatgccggtcagagaatattgcctcag
atcatcggaggttcagatctggtcgtccatcatcacatgcaaagccaggcaagccaagat
atgttcctcggagattctcggagttctgacattgatagagcggaggctctagccgatgag
ctcttttctgtggaaccgagaggaaggaggggtagatga
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