Apostichopus japonicus (Japanese sea cucumber): 139961428
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Entry
139961428 CDS
T10891
Name
(RefSeq) uncharacterized protein
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ajj03041
]
139961428
Enzymes [BR:
ajj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139961428
Spliceosome [BR:
ajj03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
139961428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
139961428
NCBI-ProteinID:
XP_071816683
LinkDB
All DBs
Position
20:33130891..33154540
Genome browser
AA seq
1490 aa
AA seq
DB search
MAASEEKTAHNLLERKRTSDVLSSETINVDFASLMLSDPVQKGLTSAGFEKPSPIQLKAI
PLGRCGLDLIVQAKSGTGKTCVFGVIALESVIATSNSLQILILAPTREIAVQIQAVIQAI
GGAIEGLKCHTFIGGTIFGQDRQNLKKCHIAVGTPGRIKQLIEYDVMKTDSVRLFILDEA
DKLLDERFQASVNWIYHHLPENKQMLALSATYPETLAQQLTNYMRDPTFVRLNPKDLVLQ
GIKQFYKIVPGHHLPHKSFQIKADHLVNLLSQIAFNQCLIFSNLQSRAQNLCDLLLERGW
PVTYISGNQEQVDRMKAMAELKTYKCRILISTDLTARGIDAENVNLIINLDVPTDFKTYL
HRIGRAGRYGTHGAAITLASEGSEVGLLKTVQKRSGSDIKVLPDPLPSRLLEMTFQEVET
EVLGPECTVPNSASGDTVEEMTSSRTVTPSSDEANVEEYDGRKNVVAVIDEGGDRKVEDQ
RQESEKEDARLGVDGGTGVFQNGKLSQNDISQVPLVDSEDDKKESEVLEDRNRKWSDHPS
RGKAIWSMKNELEDWLVPMAIVQQSKETSRKRWPWQEVVKLFQDGGSDADEVVGSGVLEG
NSVAELENVGKSEFASRCQRKELLSEETDVKATDSDVPSSAFEIEEMTSEMMQTVKDGKS
SGETLELNEKRKKNNDDDVNECLKYLKDSDILEEFRNLKILAEQVKTGESVLEMQDLYPG
FPRRDELDHGSSCYEKKSHDCIETSLRASSRNRNVVEKELGNVRSERLYLPKPHSGGEDE
EKQNGSSHFDCGEDLNLNKNSTSSQRTGRPKESIQPTGGDVREGAAFSDKGKDIAKKGMK
INREGRQKARNATNTNVQDVNDDAQYDRGKTYVYNEHGKHQVSSDPRKSLSTERANLQGS
HGNTNDDRKKPENIACNAQGCKTSDKIWEYFKLSAKTYSQVVSREKVAVSPDVGERDSKW
ENKEEIDVKLDEDSESLSSSDDENETSVKNEMDKLNPGDVDFSEISSLSSELTQESDPRS
SMTDQYGVTDRHMETDFYYADLDHYPDFDTSYFGAEWSEKSSEKSKVKQIPEFGPTFVDA
PVSHEACAYSDEEEDLYSYYWNESDRTAAEGWENYYGRSLQLWDGGQAYYCGKDLNLNKN
STSSQRTGRPNESIQPTGGGVTEGAVFSDKGKVIAKKGMKINREGRQKARNATNTNVQDV
NNDAKDDRGKTYVYNEHGKHQVSSDPGKSLSTKRANLQGSHGNTNDDRKKPENIACNAQG
CKTSDKIWEYFKLFAKTYSQDVSQEKVAVSPDEGERDSKRENKEEIDVNLDEDSESLSSS
DDENETSVKNEMDKLNPGDVDFSEISSLSSELTQESDRQSSMTDQYGVIDRHAETDFYYA
DLDHYPDCDTSYFGAEWSEKSSVKSKVKQIPEFGPTFVDAHVSHEACAYSDDEEDLYSYY
WNESDRTAAEGWENYYGRSLQLWDGGQAYYDDGLNSPYYYEGCYPDMNLR
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcagaggagaagacagcccacaaccttctagagaggaaacgaacatcagat
gtcttgtctagtgaaactatcaatgtagactttgcctcactgatgctctccgaccctgtt
cagaaaggtctaacatcagcaggatttgagaaaccatctcccattcagctgaaggccata
ccattaggcagatgtggattagatctgatcgttcaagcaaaatctgggactggaaagact
tgcgtctttggtgtcatagccctggagagcgtcatcgccacatccaacagcttgcaaatt
ctcatccttgcacccactcgggagattgcagtccagattcaagccgtgattcaggcaatt
ggtggagctatagagggattgaaatgccatacattcatcggtgggaccatctttggacaa
gatcgacaaaacctaaagaaatgtcacatcgccgttggcacgcctggtcgcatcaaacag
ctgattgagtatgatgtcatgaaaacagacagcgttagacttttcatccttgatgaggca
gacaagctcttagatgaaagattccaggcatctgttaactggatttatcatcatttacca
gagaacaagcagatgttagcgctctctgctacttacccagaaacccttgctcaacaactc
accaattacatgagagatccaacttttgtgcgcctaaatccaaaagaccttgtcttgcaa
ggcataaagcagttttataagattgttccaggacaccatctcccacacaagagcttccaa
atcaaagcagatcaccttgtcaacctcttatctcagattgctttcaaccagtgtcttata
ttttcaaacctgcaatcaagagctcagaacctctgcgatttactcctggagagaggttgg
ccagtaacttacatctccggaaaccaagaacaagtagacaggatgaaggcgatggcagag
ctgaaaacttacaagtgtaggatactcatctcaacagatctgactgcgcgaggtatagat
gcagaaaacgtcaatctgatcatcaacttagacgtacctactgatttcaagacctacctg
catagaatcggccgagcgggaagatatggcacccacggtgcggccatcactctggccagt
gaagggtcagaggtcggtcttcttaaaacggttcagaagaggagtggaagtgacatcaaa
gtgttgccagatcctttgccatcacgtcttttggagatgactttccaagaagttgagaca
gaagttcttggtccagagtgcacagtcccgaatagtgcttccggggacacggtggaagaa
atgacgtcgtcaagaacagtcactcctagtagtgacgaggcaaatgtggaagaatatgac
ggacgtaagaatgtggtcgcagtcatcgatgaaggtggggatagaaaagtagaagaccaa
agacaggaaagcgagaaagaggacgctcggttgggcgtagatggaggtacgggtgttttt
cagaacgggaagctgtcacaaaatgatatttctcaggttccgttggtcgactctgaagac
gataaaaaagaaagtgaagtacttgaggataggaacaggaagtggagtgatcatccatcg
agaggcaaggccatatggagcatgaagaatgagttagaggactggttggttcccatggcg
atagttcaacagtcaaaggaaacgtcaaggaagagatggccttggcaggaagtggtgaag
ttatttcaagatggaggcagtgatgcggatgaagtagttgggagcggagtcttagagggc
aattctgttgcagaattggaaaatgttgggaagagtgaatttgcaagtcgttgtcagaga
aaggaattattgtctgaagaaaccgatgttaaggcaacagacagcgatgttccttcatca
gcttttgaaattgaggaaatgacttctgaaatgatgcaaacagtaaaagatggaaaatca
tctggtgagactttagaactaaatgagaagaggaagaagaataatgatgatgatgtaaat
gaatgtctgaaatatctcaaagattcagacattttggaagaatttagaaatttgaaaatt
ctggcagaacaagtcaagactggcgaatcagtcttggagatgcaagatttatacccaggg
tttcccagacgagacgagcttgaccacggctcgtcgtgttatgagaaaaaaagccacgat
tgtattgagacaagcttgagagcttcaagtaggaacagaaatgtagtagaaaaggaatta
ggaaatgttagatcagaaaggttgtacttaccaaaaccgcactctggaggagaggatgag
gaaaaacagaatggatcctctcattttgattgtggagaagatttaaacctgaataaaaac
agcacttcaagtcagagaactgggagacctaaggaaagcattcaacctacagggggagat
gtcagagagggcgctgcattttctgacaaagggaaggatattgcaaagaagggcatgaaa
ataaaccgtgagggaaggcagaaggctagaaatgctacaaatactaatgttcaagatgtg
aatgatgatgctcaatatgacagaggcaaaacttatgtatacaatgaacatggaaagcat
caggtttcttcagatcccaggaaaagtttaagtacagagagagcaaatttacaaggaagc
cacggtaatacaaatgatgacaggaaaaaacctgaaaacattgcctgcaatgctcaggga
tgcaaaacttcggataaaatttgggagtactttaaactctctgccaaaacatattcccag
gttgtatctcgggaaaaggtggcagtttcccccgatgtgggtgagagagatagtaaatgg
gaaaacaaagaagagatcgacgtgaaattagacgaagactctgaatctctttcgagcagc
gatgatgaaaatgaaacgtcagtaaagaatgagatggataaacttaatcctggtgatgtt
gatttttcagagatctcgtcactatcatccgaactcacacaagagtccgatccccggtcc
agtatgacggatcagtatggagtgaccgatcggcacatggaaactgacttctattatgcc
gatctggatcattatccagattttgacacttcttattttggtgccgagtggtcagaaaaa
tcttcagaaaagtcaaaggttaaacagattcctgaatttggtcctacttttgtggatgct
cccgtgtcgcatgaagcatgtgcttactcggatgaagaggaagacctgtattcatactac
tggaatgaatcagacagaacagcagctgaaggttgggagaattattatggaaggtcttta
caattatgggatggaggacaagcttactattgtggaaaagatttaaacctgaataaaaac
agcacttcaagtcagagaactgggagacctaatgaaagcattcaacctacagggggaggt
gtcacagagggtgctgtattttctgacaaagggaaggttattgcaaagaaaggcatgaaa
ataaaccgtgagggaaggcagaaggctagaaatgctacaaatactaatgttcaggatgtg
aataatgatgcgaaagatgacagaggcaaaacttatgtatacaatgaacatggaaagcat
caggtttcttcagatcctgggaaaagtttaagtacaaaaagagcaaatttacaaggaagc
cacggtaatacaaatgatgacaggaaaaaacctgaaaacattgcctgcaatgctcaggga
tgcaaaacttcggataaaatttgggagtactttaaactctttgccaaaacatattcccag
gacgtatctcaggaaaaggtggcagtttcccccgacgagggtgagagagatagtaaacgg
gaaaacaaagaagagatcgacgtgaatttagacgaagactctgaatctctttcgagcagc
gatgatgaaaatgaaacgtcagtaaagaatgagatggataaacttaatcctggtgatgtt
gatttttcagagatctcgtcactatcatctgaactcacacaagagtccgatcgccagtcc
agtatgacggatcagtacggagtgatcgatcggcatgccgaaactgacttctattatgcc
gatctggatcattatccagattgtgacacttcttattttggtgccgagtggtcagagaag
tcttcagtaaagtcaaaggttaaacagattcctgaatttggtcctacttttgtggatgct
cacgtgtcgcatgaagcatgtgcttactcagatgacgaggaagacctgtattcatactac
tggaatgaatcagacagaacagcagctgaaggttgggagaattactatggaaggtcttta
caattatgggatggaggacaagcttactatgacgatggccttaattctccctactattat
gaaggttgctatcctgacatgaatttgagataa
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integrated database retrieval system
