Apostichopus japonicus (Japanese sea cucumber): 139962032
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Entry
139962032 CDS
T10891
Name
(RefSeq) histone deacetylase 6-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ajj01009
]
139962032
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139962032
04131 Membrane trafficking [BR:
ajj04131
]
139962032
03036 Chromosome and associated proteins [BR:
ajj03036
]
139962032
Enzymes [BR:
ajj01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
139962032
Protein phosphatases and associated proteins [BR:
ajj01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139962032
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
139962032
Membrane trafficking [BR:
ajj04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
139962032
Chromosome and associated proteins [BR:
ajj03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
139962032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
139962032
NCBI-ProteinID:
XP_071817959
LinkDB
All DBs
Position
20:26814011..26849699
Genome browser
AA seq
1099 aa
AA seq
DB search
MADQEQNEEQKFDTEKKRKVHTKKKQPRSDQEEKKRKAREEMAKKRQAQQENDELSVEFV
GMTIADTPTVPVVKQTGLILDEMCLKHHCNFGSIHADAECPDRLRAIQTKIKEEGLMDRC
VGVPLRPAKDEEIKCIHSDEYLAKLKTIPNLSDEELKSFAESYDSIFLCKESFEVACSVA
GGAIDLVKQIQTGQLQNGFAIVRPCGHHAGHNEANGYSLLNNVAIAAKQAVENWNVKRVL
VIDWDVHHGQGIQRAFYNDPRVLYFSMHRYENGEFWPHLPESNWDHIGDGEGKGYNINIP
WNKTNMGDAEYFSIFQQILLPVALEFKPELVLVAAGFDSAKDDPKGEMAVSPTFYSHMTQ
SLMGLANGKLALILEGGYNSTSLAMGATACLKTLLGDPCSPSEPLGAPCQSARETMFNVI
NQLQPHWRCFQIALSSRLKYLLEISPEEKKEETSNREASSQEKPSGDATMGSIPTSRTCL
VYDDRMKRHRIGFGPFFHLLTKKTSQVVRTWMEENMSHPERPERISSIFKKHEEYGLVER
CLRIEARHASIEELTLCHTESYIKVLAETRKLSAEDLDRKQCEYNSIYLCPDSYDCALLA
TGSLLNVVDTVLTGKSRSGVAIVRPPGHHADAGNPAGFCFFNSAPIATKYAQKKYNTQRI
LIVDWDVHHGNGTQNLLERDPGILYISLHRFDDGTFYPGSSGDPHLVGKGPGEGYNINIA
WNYGPMGDAEYLAAFRHIIMPIAYEYNPELVLISAGFDAARGDPLGGYDVTPEGYGLMTH
MLSSLAGGKVIMVLEGGYNLISISESMARCTHSLLGDPCLSFEPGQPKLEAYGSILLTLK
YHTKYWKSAGYQFNLLKHQAEKMEILLEAQVAAEEAAAKSKAEEESKKQAAAEQAVTELT
QSIESLSTTEQGGGGPKLQETGGGDQIPASGEMHGDAAAAGSLQGAQGDSSGAEGGTEEL
MGAAGGSNQPISFQISALLSDADSEEASLFAVTPLSWCPHLEAGVKPLPAKGLDVTAQCQ
ICSGGKENWVCLTCYQVFCGRYINEHMVQHGKEVNHPVVLSYADLSVWCYGCEQYVHNEM
VLPAKRAAHLNKFGEDMPT
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggccgatcaagaacaaaatgaagaacaaaaatttgatacagagaagaaacgtaaggtg
catactaagaagaaacaaccaaggagtgaccaagaagaaaagaaaaggaaagcaagggaa
gaaatggctaagaaaagacaggcacaacaagagaatgatgaactgtccgttgagtttgta
ggaatgacaattgctgatactcctactgttccagtcgtaaagcagaccggtctcatactg
gacgagatgtgtttgaaacaccattgtaactttggaagtatccatgctgacgcagagtgt
ccagataggctacgagccatacaaactaagatcaaggaagaaggattaatggacagatgt
gtaggcgtgccgcttagaccagccaaagatgaagaaatcaaatgcattcatagtgatgaa
tatcttgctaagttgaagacgattccaaatttaagtgacgaagaactgaaatcctttgca
gagagctatgattctatcttcctatgcaaggaatcatttgaggtggcctgtagtgttgct
ggaggagccatcgacttggtgaagcagattcagacaggacagcttcaaaatggatttgct
attgttaggccttgtggtcaccatgcaggacacaatgaagccaatggttattccttgtta
aacaatgtagcaatagcagctaagcaagcagtggaaaattggaacgtaaaaagagtactc
gttatcgactgggatgtccaccatggccaaggaatccagagggctttctacaatgacccc
agggtcctttacttttctatgcatcgttacgagaatggagaattttggccccatctacca
gaatcaaactgggaccatataggagatggggaaggaaagggatataacattaatatcccc
tggaataagactaatatgggagatgctgaatatttctccatctttcaacaaatacttcta
ccagtggccttagagttcaaaccagagttagttttggtagcggctggattcgacagtgct
aaagacgacccaaagggtgaaatggcagtatcaccaacattctatagtcacatgacacaa
tcattgatgggattagccaatgggaagcttgcactcattttagagggaggttacaatagt
acatctttagcaatgggagctacagcttgcctgaagaccttattaggtgacccttgcagc
ccgtcagaacccctgggtgcaccctgtcagagtgccagagaaaccatgtttaatgttatt
aatcagcttcagccacactggaggtgcttccagattgccttaagctcacgacttaagtat
cttttggaaatctctccagaagaaaaaaaggaggaaacttcaaaccgagaagcctcttca
caggagaaaccttcaggagatgccacaatgggctcaatccctacaagcaggacatgcctg
gtctatgacgacagaatgaagagacatcgaatcgggtttggtcctttttttcatttactt
actaaaaaaacttctcaagttgttagaacatggatggaagaaaatatgtctcacccggag
agacccgaaagaatttcatcaattttcaagaaacatgaagagtatggactcgttgaaagg
tgtttaagaatcgaggcacgacatgccagcatagaagaactgacactctgccacaccgag
agttatatcaaagtactagcagagacgaggaaattatcagccgaagatctcgatagaaag
cagtgcgaatataattcgatctatctttgcccagattcttacgactgtgcactgctagca
actggttcactcctcaacgttgtcgacactgttctcactggaaagtctcgttcaggagtg
gcaatcgtgaggccacctggtcaccatgccgatgcaggcaatcctgctggattctgtttt
ttcaactctgctcccatagcaacgaagtatgcacagaagaaatacaacacccaaaggata
ttgattgttgattgggatgttcaccatggtaatggaactcagaacctcctagagagagat
cctggcattctgtacatttccctccatcggttcgatgatggtaccttctacccggggagt
tcaggggatcctcatcttgtcggaaaaggccctggagaaggttataatatcaatattgcg
tggaattatggtccaatgggggacgctgagtacttggcagccttcaggcacatcattatg
cctattgcttatgagtataatccagagctggtcctcatttcggcaggttttgatgctgcg
agaggtgacccactgggtggctatgatgtaacaccggaagggtatggattgatgactcat
atgctgagtagcttagcaggaggaaaggtcataatggtactagagggaggctataacctt
atctctatatctgaatccatggcaaggtgtactcacagcctcctaggtgacccctgtttg
agttttgaaccaggtcaacccaaactagaggcttatggttcaattcttttgactttgaaa
tatcataccaagtactggaaatccgcaggatatcaattcaatcttttgaagcatcaagca
gagaagatggagattctcctggaagcccaggtggcagcagaagaggcagcagctaagagc
aaagcagaagaggagagtaagaaacaggcagccgctgaacaagctgtgactgagctgaca
caatccatagaatccctctcgacaacagagcaaggaggcggaggcccaaaactccaggag
actggaggaggggaccaaatacctgcctctggagagatgcatggagatgctgcagctgct
ggaagtctacaaggtgcccagggagatagttcaggggcagaagggggcacagaggagctc
atgggggcggccggtggtagcaatcaaccaatcagcttccagattagtgctctcctgtca
gatgcagactcagaggaggcttccttatttgctgtgactcctttatcttggtgtccccat
ctagaggcaggagttaagccacttccagccaaagggttggatgttacagctcaatgtcag
atctgttcaggtgggaaagagaactgggtttgcttgacctgttaccaggttttctgcggt
cgttacattaacgagcacatggtccagcacggcaaggaggtcaatcacccggtagtcctc
agttacgctgacctttccgtttggtgttatggttgcgaacagtacgtccacaatgagatg
gtgctgccagccaaacgagctgctcatcttaacaagtttggagaagacatgccaacgtaa
DBGET
integrated database retrieval system
