Apostichopus japonicus (Japanese sea cucumber): 139962206
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Entry
139962206 CDS
T10891
Name
(RefSeq) DNA repair protein complementing XP-C cells homolog
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
139962206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ajj03400
]
139962206
DNA repair and recombination proteins [BR:
ajj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
139962206
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
139962206
NCBI-ProteinID:
XP_071818301
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Position
20:22510977..22526759
Genome browser
AA seq
1255 aa
AA seq
DB search
MKMSSRRSKRKPLQKVCDDQNGREVKKRKRKAKGLNHEQLQGHVASGIQRSSRLKSAKAV
NYREEENSSGSEDHVERDDSEYENSAEEDKDFDLSLKRSAKKASVRRVKAKIKEDIKQDK
ESSDSENDFIKTNVSFEVSKLKTEINLSSDEESDIADSSGRGEKEGCDVAFDASGNESHL
PTSDCKQDVDVKVNIRDEKTPSNILKRKTSLFEESDGEDEDFVHDEEKESLKTGAEREKR
AVVKIKRLKVTKGPKGQQEEESVVPEKSEDEITEPRQRPKRKCRKSPVKTIQNKSKQKRQ
PEGIKKEVEKNVIVEKKGKKQMNKTKQKKIECKSEKSHNSQENVEDMSPTINTEMIDTDA
KDGGDLSESSDEEWEDVEDIQPGVSPKKKKQTESAVSSVVEIDIEMPGAAKKKRKAYDWA
DYYRRLLNRFNKDRQIELHKIHLLCLLANGFHRNKVCNEPLLQATALSLIPPDVLKYKPK
MLNTDFVYKLLFWFRKHFPVTADLPCSSPQNFPVFQLMQAMQNQKFSSVEEVVIVFVLCI
RALGGDARLVFSLQPITWKADVVEKNSKGKNSKSSSPKSPLTPPAKAEKRKTVKKEQTSS
ETPKASSSKAAKTNKKNSARQKAKDVKKEVRDVAKEDEQMSSKKREAKGGRKRVSTSVTR
KPGQTRKLTKNSQSIKYDSQDNDDDDDFEEVKQTPQRRLKVKGQKSSSKKGTSVKERNES
KNNRRKVKLEEDSDQDSGDEMITPKRNLRRRKVKKATVSKSSKRSDDEGDEEDKLSSEAS
NYSEEEWIHQKKSATKTVKQGNKISPNASKDLNDSDSDFDIETLSMKKRQTSSSKLQKNY
KILSSDSDNMEEIAKKRPQGIDVWCEVFVPAENMWVSVDCSNGFVNKPHHLEALATKPLL
YVIGFDKDNSAKDITQRYAKRWMAYNIKLRIEKFDENWWSETLGRYKSMDKKRNRVEDEQ
MEAHNLDKPLPKSIVEYKNHPMYALERHLLKFEGIYPPTAAVLGYCRGEPVYSRECVHTL
KSKHTWMKEARVVKDGEQPYKFVKKLINPFKRHLLTPEEQNQMLDIYGEWQTEDYIPPPA
KDGIVPRNEYGNVELFKPCMLPKGTVHLQIPGLNRVANKLDIDCAPAMMGWEFHKRFACP
ILDGFVVCEEVADVLVAAWEEEKVEQEKKRKLKREQRAMKNWKHIIKSIMIRERLKEKYQ
LEEETESEETKEKGKGKGKGKKVQKTKAYWPQNKMTTFEGDASNLLPFEKKPTKS
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgagtagcagacgttcaaagaggaagcctcttcagaaggtttgtgatgatcag
aatggaagagaggtgaaaaagaggaaaagaaaagccaaaggactgaaccatgaacaattg
caaggacatgtagcaagtggcatccagcgatcaagcagattaaagagtgcaaaggctgtc
aactatagagaagaagagaacagctcaggaagtgaagatcatgttgagagggatgattct
gaatatgagaactctgctgaagaggataaagactttgatctgtcactaaagaggagtgct
aaaaaggcaagtgttcgaagagtcaaagcaaaaatcaaggaagatatcaaacaagacaag
gagtcttcagactctgaaaatgattttatcaaaactaatgtgtcatttgaagtgtctaag
ttgaagacagagataaatctttccagtgatgaagaaagtgacattgcagatagcagtggc
agaggggaaaaagagggctgtgatgtcgcttttgatgcatctggaaatgaatctcatctt
cccaccagtgattgtaagcaggatgtggatgtaaaagtgaacatcagagatgaaaagact
ccctcaaacatattgaaaagaaagacatctttgtttgaagaaagtgatggtgaagatgaa
gactttgttcatgatgaagaaaaggagagcctaaaaactggagctgagagagagaaaaga
gctgttgtaaagattaaaagattgaaggtgacaaagggaccaaagggacaacaagaagag
gaaagtgttgtgcctgaaaaaagtgaagatgagattacagaaccaaggcaaagacccaag
agaaaatgtaggaaatctcctgtaaagacaatacaaaacaaaagcaaacaaaagaggcag
cctgaaggtattaagaaagaagttgaaaaaaatgtgattgtagagaaaaaagggaagaag
cagatgaacaaaacaaaacagaagaagatcgaatgtaagtctgagaagtcgcataattct
caagaaaacgtggaagacatgagtccaacaataaacacagaaatgatcgacacagatgca
aaggatggtggcgacttgtctgagagcagtgatgaagaatgggaagatgttgaagatatt
caaccaggagtgagtcccaagaaaaagaaacaaactgaatcagctgtctcttctgtggta
gaaatagacattgagatgccaggagctgctaagaaaaagaggaaggcctatgattgggca
gactattatagacgactgctgaacagatttaataaagacagacagattgaattacataag
attcatcttctctgcctattggccaatggtttccatagaaacaaggtttgtaatgagcct
ctcctacaagctactgcactttctctgatccctccagatgttctgaaatacaaaccaaaa
atgctgaatactgattttgtttacaagttattgttttggtttaggaaacactttccagtg
accgcagatttaccctgttccagcccacagaattttcccgtcttccaactgatgcaagca
atgcagaatcagaagttcagctctgtagaagaagttgtcattgtttttgtcctgtgcatc
agagcactcggtggagatgccagacttgtattttcccttcagcccataacttggaaagca
gatgtagttgaaaagaattccaaaggcaagaattcaaaatcttccagccccaagtcacct
ttgacccctccagccaaagcagagaagagaaaaacagtcaaaaaagaacaaacctccagt
gagacaccaaaagcaagttccagcaaagctgcaaagacaaacaaaaagaacagtgccaga
caaaaagccaaggatgttaaaaaagaagtcagagatgttgctaaagaagacgaacaaatg
tcttcgaagaaaagggaagcaaagggtggtaggaaaagggtttcaacatctgttacacga
aaacccggccaaacacggaaactcaccaaaaactcacagtcgataaaatatgatagtcaa
gataatgatgatgatgatgactttgaagaagtgaaacaaacaccacaaagaagattaaag
gtcaaaggtcaaaagtcatcttcaaagaaaggcacgagtgtgaaggagaggaatgagagt
aagaacaaccgcagaaaagttaagttggaggaagattcagatcaggatagcggagacgag
atgataactccaaagagaaacttgagaaggaggaaagtcaagaaggctacggtgagcaaa
tcgagcaaaagatcagacgacgaaggtgacgaggaggacaaactgagtagtgaggctagt
aactattctgaagaagagtggattcatcagaagaaatcagctaccaaaactgtcaaacag
ggaaacaaaatcagtccaaatgcatccaaagacttgaatgactcggacagcgactttgac
attgaaacgctcagcatgaaaaaacgtcaaacttcttcctcaaagctacagaagaattac
aagattctgtcatcagattcagacaacatggaggaaattgcaaagaagagaccacaaggt
atagatgtgtggtgtgaagtgtttgtcccagctgagaacatgtgggtttctgttgattgc
agtaatggatttgtcaacaaaccccaccacctagaagccctagcaaccaagcccctgttg
tatgtcattggatttgacaaagacaatagtgccaaagatataacccagaggtacgctaag
cgttggatggcatataatatcaagcttaggattgagaagtttgatgaaaactggtggtct
gagactcttggaagatacaagagcatggacaagaaaaggaacagagtcgaagacgaacag
atggaagctcacaatctcgacaagcctctcccgaagagcatcgtggagtacaagaaccat
cctatgtatgccttggaaagacatctcctcaaatttgaaggcatctacccaccaacagct
gctgtgctgggatactgcagaggagagccggtgtactcacgtgaatgcgttcacaccctg
aagtcaaagcacacctggatgaaagaagctcgtgtcgtgaaagatggagagcaaccatac
aaatttgtgaagaaacttatcaatccatttaaacggcatttactcactccagaggaacag
aaccaaatgctggatatttatggtgaatggcagacggaggattatataccaccaccggcc
aaagatggtatcgtcccaaggaatgaatatggcaatgtagaactctttaaaccttgcatg
ttaccaaagggaacagttcatttgcaaatccccggtctgaacagagtggccaacaagcta
gatattgactgtgcaccagcaatgatgggctgggaattccacaagaggtttgcttgtcct
attctggatggattcgttgtctgtgaagaggttgcagatgtcctggtagcagcatgggag
gaggaaaaggtggagcaagaaaagaagaggaaactaaaacgagaacaacgggcgatgaaa
aactggaagcatatcatcaagagcatcatgattcgagagcgactgaaagagaagtaccaa
ctggaggaagagacagaatcagaagaaacaaaagagaaagggaaaggcaaggggaagggg
aagaaagtacagaaaacaaaggcctattggcctcaaaataaaatgacaacattcgaggga
gatgcaagcaatctgctgccgtttgaaaagaaacccacaaagtcatga
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