Apostichopus japonicus (Japanese sea cucumber): 139962232
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Entry
139962232 CDS
T10891
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03018
RNA degradation
ajj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139962232
09123 Folding, sorting and degradation
03018 RNA degradation
139962232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139962232
03041 Spliceosome [BR:
ajj03041
]
139962232
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139962232
mRNA degradation factors
5'-3' decay
Lsm complex
139962232
Spliceosome [BR:
ajj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
139962232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
139962232
NCBI-ProteinID:
XP_071818352
LinkDB
All DBs
Position
20:23792456..23797495
Genome browser
AA seq
96 aa
AA seq
DB search
MANALESYIDHTVSVITNDGRQIVGTLKGFDQTINLILDESHERVYSNTQGVEQVVLGLY
IIRGDNIAVIGEVDDDTDSSLDLSNIKAEPLNPVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgcactggagagctacatcgatcatactgtttcagtgattacaaatgatgga
agacagatagtgggaacattgaaaggatttgatcaaactataaatttgattttggacgaa
agccacgagagggtctacagcaatacacaaggagtggaacaggttgtacttggtctctac
attatccgtggtgataacatagctgtcatcggtgaagtcgatgatgacacagatagttcc
ttggatttaagtaatattaaagcagagccgcttaatccagtagtacattga
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