Apostichopus japonicus (Japanese sea cucumber): 139962679
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Entry
139962679 CDS
T10891
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139962679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ajj03400
]
139962679
DNA repair and recombination proteins [BR:
ajj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139962679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF2884
EAD10
Motif
Other DBs
NCBI-GeneID:
139962679
NCBI-ProteinID:
XP_071818957
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All DBs
Position
21:complement(7616798..7646610)
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AA seq
935 aa
AA seq
DB search
MALQPNQQLTLDSGQENGFLTFLRCMPEKPETTFRVFDRTEYYTVHGSDATFAAKEVFKT
TGVIKYLGSGANKVESVSLSKMNFESLVKDLLLIRKYRVEVYQNRSAGRNEWVLAYKASP
GNLTQFEEILFGHNDMSTSASVIAVKYVNDGGQRLVGVGFCDPTLRELGVCEFVDNDQFS
NLEALTIQLGPRECLLPSGDTTNPEATKLRLIIERGGLLVTERKRGDYSNKDISQDLNRL
LKAKNDDAVNSASFAEMELTHAVSSLAAVVKYLELLGDESNFGQFKLKTFDLSQYMKLDS
AAVRALNLLPTGLEGVNKSMSVLGLLNKCKTAQGQRLLAQWVKQPLMDKNKLEERLNAVE
SFVDDTELRQLLQDEHLKRIPDFQRLSKKLQRKKATLQDCYRVYQAIDFMPEIIDALNRY
DGNHSSLLKELFVKPLQEHLMDFGKFQEMIETTVDLQQALNQEYLIRADFDENLTALRSK
MDTLERDIEAQLGKAATSLGLEAGKTIKLESNNMLGYFFRVTRKDEKVLRNSTKFTTIDT
NKNGVRFTNSTLKSLNDEHLTSKEDYSETQKAVVTEVINIAAGYVEPMLSLNEVTAQLDV
LISFAQVSSSAPVSYVRPKILEKGTGVIKVVQGRHPCLEVQDDVAFIPNDISFERDKQMF
HIITGPNMGGKSTFIRQTGVIVLLAQIGCFVPCDAAEISIVDCILARVGAGDCQLKGVST
FMSEMLETSSILRNGTENSLIIIDELGRGTSTYDGFGLAWGISDFIARKVRGYCLFATHF
HELTALADEIVTVNNLHVTALTSDGQLTLLYRVKPGVCDQSFGIQVAELAHFPLKVINNA
KVKAAELEDYQSIAASDGCMEGLDEPAAKRKRMAKEKGESIIERFVSKVKGLPWDSISDE
EAWEKMQEFKTEVAAEQNPFIEEILSRGQMLSTVQ
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcattacagccgaatcagcagctcacattggatagtggacaggaaaatggtttctta
acatttttgagatgtatgcctgagaaaccagagacaacatttagagtctttgatcgaaca
gaatactacactgttcatggatctgatgctacctttgctgctaaggaagttttcaaaaca
acaggggttatcaagtaccttggttcaggagccaataaagtagagtcagtatctctcagt
aagatgaactttgaatccttagttaaggatttactcctcatcagaaagtacagagttgag
gtttaccagaaccgatctgctggaagaaatgagtgggtgcttgcctataaggcttcacct
ggtaatctcacacagtttgaggaaatcctctttggccacaatgacatgtcaacttctgcc
agtgtaatagctgtcaaatatgtcaatgatggtggccagaggctggttggtgttggcttt
tgtgatccaactcttagggagttaggcgtgtgtgaatttgtagataacgatcaattttct
aatcttgaggcattaaccattcaacttggcccacgggaatgtctgctgccctcaggagat
actacaaatccagaagctaccaagctaagactaataattgagagaggaggccttttagta
actgagaggaaaaggggagattactccaacaaagacatctctcaagatctgaacaggctt
ttgaaagcaaagaatgatgatgctgttaattctgcatcttttgctgagatggaactaacc
catgccgtatcctctctagcagcagtggtgaaatatctagagctcttgggtgatgaaagt
aactttggtcagttcaaattgaagacgtttgaccttagccagtatatgaagctggattct
gctgctgtgagagctctcaacctgctacctactggtcttgagggagtcaacaaaagtatg
tctgttcttggccttctgaataaatgtaagactgcacaggggcaaaggttacttgctcag
tgggtgaaacaacccttaatggacaagaataaattagaagagaggctgaatgcagtggaa
agttttgtggatgatacagagctcaggcagttgctacaggatgaacacttaaaacgaatt
ccagacttccagaggctgtccaaaaagttgcagagaaagaaggccactcttcaggattgc
tacagggtttatcaagcaattgactttatgccagagatcattgacgctctaaaccgttat
gatggaaatcacagtagtctgctgaaggaactatttgtgaaaccattgcaggaacatctg
atggattttgggaaatttcaagaaatgatagaaaccacagtggacctacagcaagctcta
aaccaagagtatttaatccgagctgactttgatgaaaacttaacagccttgagatccaaa
atggacacactagaaagagacatagaggcacagcttggcaaagcagcaacatctttaggt
cttgaagctggcaagactatcaaactcgaatcaaataatatgcttggatacttcttcagg
gtgacaagaaaggatgagaaagtattgaggaacagcacaaagttcacaaccattgacacc
aataaaaatggtgttcgattcaccaattccacgctcaagtcactgaacgatgagcacctc
acatcaaaagaagattacagtgaaactcagaaagctgttgtaacagaagtcataaatatt
gctgccggatatgttgagcctatgctatccctaaatgaggtcactgctcagcttgatgta
ttaataagttttgctcaagtttcttctagtgctccagtgtcatatgtaagacctaaaatc
cttgagaaggggactggtgtcatcaaggtagtccagggacggcatccttgccttgaagtc
caagatgatgtagcatttattccaaatgacatcagttttgagagagacaagcaaatgttt
cacattatcactggtccaaacatgggtggcaaatcaacattcatcagacagactggtgtg
attgtgctgttagctcaaattggctgttttgtcccttgtgatgctgcagagatatccatt
gtagactgcatacttgctagagttggggctggggattgccagcttaaaggagtttccact
tttatgtcagaaatgctggaaacgtcttctattctcaggaatggaacagagaattctctg
atcataattgatgagcttggccggggtacttcaacctatgatggctttggattagcctgg
ggaatatctgatttcatcgctcgcaaggtcagaggttactgtttgtttgcaactcatttt
catgagcttactgctctagcagatgagattgtgacagttaacaatctacatgtaacagct
ctaacctctgatggacaactcacactgctttacagagtcaaaccaggggtttgtgaccaa
agttttggtatccaagtggcagagttggcccactttcctctgaaagtgattaataatgca
aaagtgaaagcagctgaattagaagactatcagagcatagctgcctcggatggatgtatg
gaaggtcttgatgagccagcagctaaacgcaaaagaatggccaaggagaaaggtgaatcc
ataattgaaaggtttgtgtcaaaggtcaaggggttgccatgggacagcataagtgatgag
gaggcttgggaaaagatgcaggaatttaaaacagaggttgcagctgaacagaatccgttc
attgaagaaatcttaagtagaggtcagatgttatccacagtccagtag
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