Apostichopus japonicus (Japanese sea cucumber): 139963354
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Entry
139963354 CDS
T10891
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2 isoform X1
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03018
RNA degradation
ajj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139963354
09123 Folding, sorting and degradation
03018 RNA degradation
139963354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139963354
03041 Spliceosome [BR:
ajj03041
]
139963354
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139963354
mRNA degradation factors
5'-3' decay
Lsm complex
139963354
Spliceosome [BR:
ajj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
139963354
Complex C
U2 snRNP components
139963354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
139963354
NCBI-ProteinID:
XP_071820123
LinkDB
All DBs
Position
22:complement(9334462..9337288)
Genome browser
AA seq
153 aa
AA seq
DB search
MFSYLTGSRINNVYCSPNSFSWRSLIWQPKKISYLIDCQVNRHNLILNFEIPLLICFFQL
FYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTEITVTDPDKYPHMLSVKNCFI
RGSVVRYVQLPADECDTQLLQDAARKEAAQSKQ
NT seq
462 nt
NT seq
+upstream
nt +downstream
nt
atgttttcctatttgactggaagccggatcaataatgtgtactgttcacctaattcattc
agttggcgttctttaatttggcaacccaaaaaaatttcttatttaattgactgccaggtg
aataggcacaaccttattttaaactttgagatacctttattgatttgtttcttccagctg
ttttactctttcttcaagtcactggttgggaaagatgtggtggtggagctaaaaaatgac
ttaagtatctgtggtactctgcattcggtggatcagtttctgaacatcaagctgacagaa
atcactgtgacagatcccgataaataccctcatatgttgtcagtcaaaaactgtttcatc
agaggttctgtggtgagatatgtacaactacctgcagatgaatgcgacacccaacttctc
caggatgcggcaaggaaagaggcagcccagagcaagcagtga
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