Apostichopus japonicus (Japanese sea cucumber): 139963543
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Entry
139963543 CDS
T10891
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139963543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ajj03041
]
139963543
Spliceosome [BR:
ajj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
139963543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_Aladin
NBCH_WD40
PRP4
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_WDR41
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_IFT122_1st
Ge1_WD40
Beta-prop_DCAF12
Beta-prop_SPT8
WD40_like
Beta-prop_IFT140_1st
Beta-prop_ACSF4
Beta-prop_NWD2_C
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
139963543
NCBI-ProteinID:
XP_071820495
LinkDB
All DBs
Position
22:5598908..5611611
Genome browser
AA seq
489 aa
AA seq
DB search
MDEIPAKRQKIHYGVLDLKLKDQSSAGSTNINLSSGETLDLEDHLSERKQALLAQFEKRR
KARQINVTTDDAEVKALLRKNGEPICLFGEGPAERRERLRHLLADLGEVQSKKQKAEEEE
RQKKKMEEEETTWYHEGPESLKTARFWIADYSVPRASSRLQVERERRNITDSVRNAKRQE
LHKNLRSLTAIGSQIGDERPISFCHFSPNSKILATSSWSGLIKLWTVPECEPIRTLTGHT
QHVGAVKFHPKATISLEDNDCCLASCSADGSVKLWSLDSEKPIANIEGHTAKVSRVAYHP
SGRFLGTTCFDCSWRLWDIEVQEEILHQEGHSKGVYSIDFQNDGALCATGGMDAFGRVWD
LRTGRCIMFMEGHLKSVLAINFSPNGYQVVTGSEDNTSKIWDLRQRQCLYTIPSHNNLVS
GAKYENDTGDYLVTCSYDNTAKVWSNPGYSLLNTLSGHDGKVMAVDISLDGQYIATSSYD
RTFKLWGVE
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaataccagcaaaaaggcagaaaattcactatggagtcttggacttgaaactt
aaggatcagtcttctgcaggctcaacaaacatcaacttgtcaagtggtgaaacacttgac
cttgaagatcatttgagtgaaagaaaacaggctcttttggctcagtttgagaaaaggaga
aaggcaagacagataaatgtaaccactgatgatgctgaagtcaaggccctgctcagaaaa
aatggcgaaccaatctgtttgttcggagaaggaccagcagagaggcgagagagattgcgg
catctgttggctgatctaggggaggtgcagtccaagaaacaaaaggcagaggaggaagag
aggcagaagaagaagatggaggaggaagaaaccacctggtaccacgaaggtccagaaagt
ctgaaaactgctagattctggatcgctgattattcagtacctcgggcaagcagcaggctt
caagtagaaagagagaggcgaaatattactgattcagtgaggaatgcaaagagacaagaa
cttcataaaaatctgaggtctctgacagcaattggaagtcagatcggagatgaaagacca
atctcattctgtcacttcagtccaaattcaaagatcctggcgacaagttcttggagtggt
cttataaaactatggacagtgcctgaatgcgaacctatcagaacattgacaggtcacaca
cagcatgttggggcggtgaagtttcatccaaaagccacaatctccttagaagataatgac
tgctgtctggctagttgttcggcagatggttcagtgaagttatggtcattagacagtgag
aaaccaatagctaatattgaaggacacacagccaaggtatctagggttgcttatcatcca
tctggacgatttctcggaacaacatgtttcgattgttcttggagactgtgggacatagag
gtccaggaggagattcttcatcaagagggacatagtaagggggtctactccatcgacttc
cagaatgacggagctctttgtgcaacagggggaatggatgcctttggaagagtttgggac
ctgagaactgggagatgtataatgttcatggaaggacacttgaaatctgtcttagcgatt
aacttctcaccgaatggctatcaggttgtcacaggttcggaggataacacatcgaaaatc
tgggacttgaggcagcgacagtgtctgtacacgataccatcacacaacaacctggtgtcc
ggggccaaatatgaaaatgacactggtgattatcttgtgacctgctcttatgataacaca
gccaaggtttggtctaatccaggctactcattactaaacaccctctctggtcacgatggc
aaagtgatggcagtagatatatctctggacggacagtacatagcaacatcatcgtacgat
aggaccttcaagctctggggggtggaatga
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