KEGG   Apostichopus japonicus (Japanese sea cucumber): 139963548
Entry
139963548         CDS       T10891                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
ajj  Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ajj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    139963548
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ajj04121]
    139963548
Enzymes [BR:ajj01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     139963548
Ubiquitin system [BR:ajj04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    139963548
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     139963548
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_RIG_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_WDR36-Utp21_1st WD40_Gbeta zf-C3HC4_2 WDR55 Beta-prop_WDR3_2nd EIF3I Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_2nd zf-C3HC4 Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_CAF1B_HIR1 zf-RING_2 WD40_like Beta-prop_EML zf-RING_UBOX Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 zf-C3HC4_3 zf-RING_5 Beta-prop_WDR35_TULP_N RING_XB3-XBAT31 zf-C3HC4_4 WD40_RFWD3 Beta-prop_Aladin Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_DCAF12 zf-RING_10 Beta-prop_IFT140_1st zf-rbx1 Beta-prop_WDR41 Herpes_UL25 RING_ZNF598 Sina_RING SAE2 Prok-RING_4 DUF6079_6th
Other DBs
NCBI-GeneID: 139963548
NCBI-ProteinID: XP_071820503
LinkDB
Position
22:complement(22588747..22630860)
AA seq 646 aa
MASGTSGNLRHGARANSQSHGSKRPGQPPSDIYKYNGIQNSYENKDNDYLCPICFDVIDE
AYITNCGHSFCYRCITQSLKARSKCPKCNFAIEKTDQIFPNFALNELILKHRQKTDKRPK
LGHPHNSHISDLHELMADPDKWGLTEVNKALEFLISKKRKLELDHQYAQNQMLKEFLEAA
KKKRQEHLDEVNKQMRLMEGDLQRVEDRLSKHRIAYNSAAMSNFPVLCNDISPSTSPPSP
NVPGENSKVDCQQEGFNGSKNVGKPQRLDATFASRRKRLHIHFEDLENCYLNIRQADLLP
AESRSVEMLDQFTDCISKFTKYSSLRPLATLSYADVYNGSSIVSSIEFDKDNDYFAIAGV
TKKIKVFEYGTVITDAVDIHYPVHEMVCSSKISSVAWSAYHKGVLASSDYEGTIALWDVF
QGVKTKLYQEHEKRCWSVDFNRMDPKLIASGSDDAKVKIWSTNKENSVTCIEAKANVCCV
KFSPSKMYNLAFGSADHCVHYYDLRNTRTAVNIFKGHRKAVSYTKFLTADEIVSASTDSQ
LKLWNVEKPHCLRTFTGHINEKNFVGLAATEDYITCGSENNSVFVYYKGLSKQLFTFKFD
TVRSVLDKDEKEEEANEFVSAVAWRTGSNVLVAANSQGTIKVLELV
NT seq 1941 nt   +upstreamnt  +downstreamnt
atggcgagtgggacctcaggaaatttgagacatggagctcgcgcaaactcacaatctcac
ggttcgaaacgacccggacaacctccttccgatatttacaaatacaacggcatacagaat
tcatatgagaacaaagacaatgattacttatgtccgatctgttttgacgtcatcgatgag
gcttatattaccaactgtgggcacagtttctgctacagatgtataacacagagcttgaaa
gcgagaagcaaatgtccgaagtgcaattttgcaatagaaaaaacagatcaaatattccca
aattttgctttaaatgaattaattctgaagcatcgtcaaaagacggacaagaggccaaag
ttaggtcatccgcacaatagtcatatatctgaccttcatgaactgatggctgatcctgat
aaatggggcttgacagaagttaacaaggctttagaatttctgattagcaagaagagaaaa
ttggaattggaccaccaatatgcacagaatcaaatgctgaaagaattcctagaggcagct
aaaaagaaaagacaggagcaccttgatgaagtcaacaaacagatgaggttaatggagggt
gatttacaaagagtggaagacagactcagcaagcaccgcatagcgtataactctgcagcc
atgtctaactttcctgtcctctgtaatgacatttcaccatccacaagtccaccaagtcca
aatgtaccaggagaaaacagtaaagttgattgtcaacaggaaggcttcaatggaagtaaa
aatgtcggtaaacctcagagattggatgcaacgttcgcttcgagaaggaagagactgcac
attcactttgaagatttagagaattgttacctcaatattagacaagcagatcttttacct
gctgagtctcgctcggtggagatgttagaccaattcaccgattgtatatccaagttcacc
aagtacagctcgctgcgaccgttagccactctaagctacgccgatgtgtacaatggttcc
agcatagtatcaagtatagaatttgacaaggataatgattatttcgcaatagccggtgtc
acaaagaagatcaaggtctttgagtacggtacggtcataacggacgcagtggatatacac
tatcccgtccacgaaatggtatgcagttcaaaaattagctctgtcgcctggagtgcttat
cataaaggggtactagctagcagcgactatgagggtactattgcattatgggacgtattc
cagggtgtaaaaacaaaattgtatcaggaacacgaaaaaaggtgctggagtgtagacttc
aaccggatggatccaaaactaatagcgtctggttcagatgatgccaaagtcaaaatatgg
tccacgaacaaggaaaactctgtcacctgtatagaagcgaaagctaatgtttgctgtgtc
aaattcagtccttccaagatgtataatctagcttttggctccgctgatcactgtgtccat
tactatgacttgagaaacacaagaacggcagtcaatatcttcaagggccatcggaaggca
gtctcatacacaaagttcctgacagcggacgaaatagtctccgcatcaaccgatagccaa
ttaaaactctggaatgtggaaaaaccgcactgccttcgaaccttcaccggtcacatcaac
gagaaaaactttgtcggtctcgccgctacggaagattacatcacctgcgggagcgaaaac
aactcagtgtttgtgtattataaagggctctcaaagcaactcttcaccttcaaatttgac
acagtccgcagtgtactggacaaagatgaaaaagaggaggaagcgaatgaatttgtcagt
gcggtagcctggaggacgggttccaacgtcctggttgcagccaacagtcagggtactata
aaagtgttggaattggtctaa

DBGET integrated database retrieval system