Apostichopus japonicus (Japanese sea cucumber): 139963595
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Entry
139963595 CDS
T10891
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139963595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139963595
03041 Spliceosome [BR:
ajj03041
]
139963595
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139963595
Spliceosome [BR:
ajj03041
]
Complex B
Other components
Prp19-related factors
139963595
Complex C
139963595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
TPR_1
ARM_TT21
TPR_7
RPN7
Motif
Other DBs
NCBI-GeneID:
139963595
NCBI-ProteinID:
XP_071820582
LinkDB
All DBs
Position
22:complement(4517989..4538807)
Genome browser
AA seq
850 aa
AA seq
DB search
MPEKEEKKILFEEDDLPYEEEILRNPYSVKCWLRYIEHKNDGPAVALNLIYERSLKELPG
SYKLWYNYLRLRRKQVKGRVITDPGYEDVNNAFERALVFMHKMPRIWLDYCQFLIDQCRV
TRTRRTFDRALRALPISQHPRIWPKYLKFVQSHPLHETAVRVYRRYLKLCPENAEEYVEY
LVSIDRLDEAALRMADIVNQEDFVSKEGKSNHQLWYDLCELICKNPTKVTSLKVDPIIRG
GIKRFTDERGKLWCSLADFYIRSGHFEKARDIYEEAIQTVTTVRDFTQVFDAYAQFEESM
IGTKMESENVTDEDDTDLELRMERFEELMNRRPLLLNSVLLRQNPHNVHEWLKRVQLYEG
KPKEIVDTFTEAVQTVDPSLATGKLYMLWVEFAKFYEKHKQFSEAGVIFDKGTKVAYIKV
EDLAGVWCEWAEMELRYENFDKALALLRRATAVPSRKAAYHDKSEPVQNRLYKCLKVWSM
YADLEESFGTFKSTKAVYDRIIDLRIATPQIIINFGMFLEENHYFEEAFKAYEKGIGLFK
WPNVFDIWNMYLTKFIKRYGGKKLERARDLFEQCLENCPAKFAKALYLLYAKLEEDHGLA
RHAMTVYDRATKAVLPAEQYEVYNIYIKRVAEVYGVTHTRPIYEKAIEVLTEEKSRDMSL
RFADLERKLGEIDRARAVYAHCSQICDPRTTATFWQKWKEFEVQHGNEDTVREMLRIKRS
VQATYNTQVNFMSAQMLAASKNLTATVSDLGSGGLDDMKLLEQRAQLMAAEAEEDKPKLK
KDILFVRGDSSKEELEIAARTANPEEINIDEEDEDESEDDVDEIQVQKKQIPSEVFGSLD
NEEISGEPKM
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaaggaagaaaagaagatattgtttgaagaggacgatttgccttacgaggaa
gaaatattgcggaacccatattctgtaaaatgctggctccgttatattgaacacaaaaat
gatggaccagcggtagcacttaacttgatctatgaaaggtctttgaaagaacttcctgga
agttacaagctgtggtacaactatctcagattaagaaggaagcaggtcaaaggtcgagtt
attacagatcccggctatgaagatgttaataatgcctttgagagagcactagtgttcatg
cacaagatgcccagaatctggttggactattgccagttcctgatcgatcagtgcagagtg
actcgtaccagacgtacatttgacagagcattacgggctctgcctatttcacagcaccct
cggatctggccgaagtacctgaagtttgtccaatcacaccctcttcacgagacagctgtc
cgagtttatagaagatacttaaagttgtgtccagagaatgctgaagagtatgtagaatat
ttagtgtccattgatcggctggatgaagccgctctgagaatggcagatatcgtcaaccag
gaagactttgtctccaaggaagggaaatctaaccatcagttatggtacgatctgtgtgag
ctgatctgtaagaatccgaccaaagtgacatcattaaaggttgatcccatcatcagaggg
gggatcaaacgatttaccgatgagagagggaaactttggtgctctctagcagatttctat
atcaggagtggtcacttcgaaaaggccagagatatttatgaagaagccatccagacagtg
acaactgtaagagacttcacccaggtgtttgacgcctatgcccagtttgaggagagcatg
attgggacgaagatggagtcagaaaatgttactgatgaagatgataccgatttagaattg
cgtatggagagatttgaagagttaatgaacaggcgccctctattactgaacagtgtgctg
ctgagacagaatccacataacgttcacgagtggctgaagagggtacagctgtacgaaggg
aaaccgaaagagattgtagacaccttcactgaggcagttcaaactgttgatccttcccta
gcaacaggaaaactctatatgctctgggtagagtttgctaaattttatgaaaagcataag
cagttttcagaggctggagttatcttcgataagggcacaaaagtggcttacatcaaggtg
gaggatctggccggcgtctggtgtgaatgggcagagatggaactcagatatgaaaacttt
gacaaggcattagctctgttgagaagagccacagcggtacctagcagaaaggcagcctac
catgataagagcgaacctgtccagaatcgtctctacaaatgcttgaaggtttggtccatg
tacgcagacctggaggaaagctttggaacattcaagagcaccaaggcagtttatgaccgc
atcatcgatcttagaattgccaccccccaaatcatcatcaattttgggatgtttctggaa
gaaaatcattattttgaggaagctttcaaagcgtatgagaagggaatcggtctgttcaag
tggcctaacgtgtttgacatctggaatatgtacttgacgaagttcataaaacgatatggt
ggaaagaagttagagagggcaagagacttgtttgaacagtgcttggaaaactgtccagct
aaatttgctaaagctttgtacctgttgtatgctaaattagaggaagaccatggtcttgcg
aggcatgcaatgacggtttatgaccgtgccaccaaagcagtattaccagcagaacagtat
gaggtgtataatatctatatcaagagagttgcagaggtctacggagtcactcacaccagg
ccgatctacgagaaagccatcgaggtgctgacggaggaaaagtcacgagatatgagtctg
agattcgcagatctggagaggaagctgggagagatcgacagagcgagggcagtatatgct
cactgttctcagatatgtgacccaaggaccacagcaaccttttggcaaaaatggaaagag
tttgaagtgcagcatggaaacgaggacacagtgagagaaatgctgagaatcaagagaagt
gtacaggctacttacaacactcaggttaatttcatgtccgcccagatgctggctgcctcc
aagaatcttacagcaacagtttctgatctaggtagtggtggcctggatgatatgaaactc
ttagagcagagagctcagttaatggctgccgaggcagaagaagataaaccgaagctgaag
aaggacattctctttgtcagaggagattcatctaaggaggaactggaaattgcggcccgg
acggccaacccggaggagataaacatcgatgaggaggacgaggatgaaagcgaagatgac
gtagacgaaatacaagtgcagaagaaacagattccaagtgaagtctttggcagcctggac
aacgaagagatcagtggagagcctaaaatgtga
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