Apostichopus japonicus (Japanese sea cucumber): 139963986
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Entry
139963986 CDS
T10891
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139963986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ajj03041
]
139963986
Enzymes [BR:
ajj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139963986
Spliceosome [BR:
ajj03041
]
Complex A
U2 snRNP components
U2 related factors
139963986
Complex B
139963986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
139963986
NCBI-ProteinID:
XP_071821362
LinkDB
All DBs
Position
22:9422806..9450439
Genome browser
AA seq
1093 aa
AA seq
DB search
MPKESRQYRKRTRSPSSGSSEDERSGSRQGDLKNKKDRSDRNKEKSRISKPIDRSRKSRS
RSKERRKRVRSRSRSREKVRERRRTSRSRSREKKKRRRSRSPKRNRRSKSRSKSPKSKEK
SSKKRESSTKDEEKNHSKQEKEAKIKEEKKEKEDSSKALELEQKKLEEEMQKRRERIERW
RQERKKAAEAAAAAEETIVTENAQEEQKKKWTLEDDDEDDNEDVAVEEEEEVKEEKMEDE
SEDKGAEADDEKEEEDGVDPLDAFMKGVTDEVQKIKAGDRERLGLRGGIVKAPATQPKSE
PSETSIGKLSVLTGVAKKQSAKGSRQSKQKGELMENDQDAMEWSSEEEQQGNLMDAVAAL
EQKKKKDLMAVDHSTITYKPFKKDFYVEVPELARMTVEEVDKRRSDMEGIHVRGKDCPKP
VESWVQCGVSHRVLTVLKKNKYAKPTPIQSQAIPAVMSGRDMIGIAKTGSGKTLAFLIPM
FRHIMDQDPLEQEDGPIALIMAPTRELAMQIYKECRKFSKPLGLQVVCVYGGTGISEQIA
ELKKGAEIIVCTPGRMIDMLAANNGRVTNLLRCTYLVLDEADRMFDMGFEPQVMKIVDNV
RPDRQTVLFSATFPRQMEALARKILTKPIEVQVGGRSVVCSDVSQHALIIEEEKKFLKLL
ELLGIYHEKGCVLIFVERQESADLLLRDLLKASYPCLALHGGIDQYDRDSIIQDFKCGNV
KVLVATSVAARGLDVKQLILVVNYDCPNHYEDYVHRVGRTGRAGNKGFCYTFIQPDQQRF
AGDVIKAFELSELKAPEEIVQMWAEFTEQQKADGKKVFTNSGFSGKGFRFDETEKELANA
KKKLQKAALGLQDSDDDEAGMNIDEQIENMFASKKRVKDVTEDELPNKNQNAAQPGEAPP
GANVNKANLELAKRLASRINQSLESGRQTNVVQQATQALMKGGSIGQNPISKMTIAEQIA
GKLNAKLNYIPKTAQEEEEEKEEPKKTTFRKYEEELEINDFPQTARWKVTSKENLANIQE
YSDAGVTIRGTYFPQGKEPKEDEGERKLYLSIESTSELSVQKAKAEITRLIKEELIRLQN
SYQPINKGRYKVL
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaagcagacaataccggaaaaggacacggtcgccctcctcaggatcgtca
gaagatgagcgttcaggaagcagacaaggagacttgaagaacaagaaagatcgatctgac
aggaacaaagaaaagagccgaatatccaaacccatagatcgcagtaggaagtcaagatct
cgctcaaaggagagaagaaagagggtaagatccaggtcaaggagccgagaaaaggttaga
gagaggaggaggacctcgagaagtagaagtcgagagaagaagaagagaaggagatccaga
tcacctaaaaggaatagaagatcaaaatcaagatctaagtcaccaaagtcaaaagagaaa
tcttccaagaaaagagagagcagcactaaagacgaagaaaaaaatcacagcaaacaggaa
aaggaagcaaaaataaaagaagaaaagaaagagaaggaagacagcagcaaagcacttgaa
ttggagcaaaagaaactggaagaagagatgcagaagaggagagagaggatagagagatgg
agacaagagaggaagaaggcagcagaagcagcggccgcggcagaggaaaccatcgtcacg
gagaacgctcaagaggaacagaagaagaagtggactctcgaagatgacgatgaggatgat
aacgaagatgttgcagttgaagaggaagaagaggtgaaggaagagaagatggaagatgaa
tcagaagacaaaggagcagaggcagacgacgaaaaagaagaagaggatggagtcgatccg
ttggatgcgtttatgaagggagtaacagatgaggtccagaaaatcaaagctggcgacagg
gagaggctaggcctacgaggtggtattgtgaaagcacctgcaacacaacccaaaagtgag
cccagtgagacctcgataggaaaactcagcgtattgaccggagttgcaaagaagcagtct
gcaaaaggatccaggcagtcgaaacagaaaggcgaacttatggagaatgaccaagatgca
atggagtggtcctctgaggaggaacagcaggggaatttgatggatgcagtagctgccttg
gaacaaaagaagaagaaagatctaatggctgttgaccactctaccatcacatataagccg
ttcaagaaggacttttatgtagaggtaccagagcttgccagaatgacggttgaagaggtt
gataagagaagatctgacatggaggggatccatgtaaggggtaaggattgccctaagccg
gtagaatcatgggtacagtgcggagtctcccacagagtgctgacagtgcttaaaaaaaac
aagtatgcaaagccgactccaatccagtcgcaggcgatcccggccgtcatgtctggaaga
gatatgatcggcatcgccaagactggcagtggtaagacactggcgtttctcatccctatg
tttagacacatcatggaccaagatccactggaacaggaagatgggccaatcgctttgatc
atggccccaacgagagagctagctatgcagatatacaaggagtgtcgtaaattttcaaag
cctctcggactccaagtcgtatgtgtgtacggcggtactggtataagtgaacagattgca
gaactcaagaaaggagctgagatcatagtctgcacaccgggacgtatgattgatatgctt
gcagctaataacggtcgtgtcaccaatttattacgatgtacttacctggtcttggatgaa
gccgacagaatgtttgacatgggattcgaacctcaggttatgaagatcgttgacaatgtt
cgtccagaccggcagactgttttgttttctgctacattcccgaggcagatggaagcttta
gcgaggaagatccttacgaaaccgatagaagttcaggttggaggaaggagtgtagtgtgc
tcggatgtttcacaacacgcgttgataatcgaggaagaaaagaaatttttgaaactgctg
gaactcctgggtatttaccatgagaaaggttgtgtcttgatctttgtggagaggcaggaa
tcagcagacttactcctcagagatcttttgaaggcaagctacccctgtttggcgttacac
gggggcattgaccagtacgaccgagactccatcattcaggatttcaagtgtggcaatgtt
aaagttctggtggccacgtcagtagcagctagaggtctggacgtcaaacaattgatcctg
gtcgttaactacgactgtccaaatcattacgaagactatgtgcatagagtagggaggacc
ggtcgagctggtaacaaaggtttctgttacaccttcatccagccagaccaacagcgcttt
gcgggagatgtcatcaaggcattcgaactgagtgagctgaaggcaccagaggaaattgtt
cagatgtgggcggagtttactgaacagcagaaagcagatggcaagaaagtgttcaccaac
agcggcttcagtgggaaaggcttccgtttcgacgaaacggagaaggaattggctaatgct
aagaagaaattacaaaaggctgccctgggtttacaagactctgatgatgatgaagcggga
atgaatattgatgaacaaattgagaacatgttcgcatcaaagaagagggtgaaggacgtc
acagaggacgaactacccaataagaaccagaatgccgctcagcccggcgaggcgccaccg
ggtgccaacgtgaacaaagccaacctagaactggctaaacgactggcttctcgcatcaac
cagagtctggaaagtggtaggcagacaaacgtcgtccaacaggccacgcaggctttgatg
aaggggggttctattggtcaaaaccctatatcaaaaatgacgatagcggaacagatcgct
ggcaagctgaacgccaagctgaattacattcccaagaccgcacaagaggaggaagaggag
aaggaagagccgaagaagaccaccttcaggaagtacgaagaggaactggagataaatgac
ttccctcaaactgctaggtggaaagttacctcaaaggaaaacctggcaaatatccaagaa
tatagtgatgccggtgtcaccatcagaggaacttactttccccagggtaaagaaccaaag
gaagacgaaggagaaagaaagttatacctttccatcgaaagtacaagtgagctctcggtt
caaaaggctaaagctgaaattactcgtcttattaaggaagagttgataagactgcaaaac
tcataccaaccaatcaacaaaggacgatacaaggtcttatga
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