Apostichopus japonicus (Japanese sea cucumber): 139964209
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Entry
139964209 CDS
T10891
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03013
Nucleocytoplasmic transport
ajj03015
mRNA surveillance pathway
ajj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139964209
09122 Translation
03013 Nucleocytoplasmic transport
139964209
03015 mRNA surveillance pathway
139964209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139964209
03041 Spliceosome [BR:
ajj03041
]
139964209
Enzymes [BR:
ajj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139964209
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139964209
Spliceosome [BR:
ajj03041
]
Complex C
Other components
EJC/TREX
139964209
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139964209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
139964209
NCBI-ProteinID:
XP_071821732
LinkDB
All DBs
Position
22:complement(4303234..4314996)
Genome browser
AA seq
427 aa
AA seq
DB search
MADNEQELLDYEELEEGTETQEAGGDAPQQQKKEVKGTYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMC
HTRELAFQIAKEYERFSKYLNNIKVGVFFGGLNIKKDEETIKTNCPHIVVATPGRLLALG
RQKILNLKHIKHFVLDECDKMLDQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCK
KFMQDPMEVYVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVVFVKSVVRC
TALAGLMIEQNFPAIAIHRGMKQEERLAKYTQFKNFQKRILVATNLFGRGMDIERVNIVF
NYDMPESSDTYLHRVARAGRFGTKGLAITFVADEEDAKILNEVQDRFDVNIGELPEEIDI
SSYIEQV
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagataacgaacaagagcttttagattatgaggagcttgaagagggaactgaaact
caagaggcaggtggtgatgcaccccagcaacagaagaaggaagtcaaaggaacttatgtc
tccattcacagttctggtttcagagatttcctactaaagcctgagttgcttcgagccatt
gtcgactgcggttttgaacatccttcagaggttcagcatgagtgtatcccacaggccatt
ctgggtatggatgtactctgccaagcaaagagtggtatgggtaaaacagcagtgtttgtc
ctggctactttacaacagttagaaccagttgatggtcaggtctccgtcctggtcatgtgt
cacactcgagagttggcctttcagattgccaaggagtatgaacgtttcagcaagtactta
aataacatcaaagtgggtgtgttctttggcggtctcaacatcaagaaagatgaagagacc
atcaaaactaattgtcctcacattgtggtggccacacccggtagattgctagccctcggc
agacagaagatcctgaatctgaagcatatcaaacatttcgtcctggatgaatgcgacaaa
atgcttgatcagcttgacatgaggcgggatgtgcaggaaatcttccgaatgactccacac
gagaagcaagtgatgatgttcagtgccacactcagcaaggagattcgaccagtctgcaag
aaattcatgcaagatccgatggaagtctacgttgatgacgagaccaaattgaccctacac
ggcctgcagcagtattatgtgaaactgaaggacaacgagaagaacaggaagttgtttgat
cttttggatgtgcttgaatttaaccaggttgtggtgtttgtgaagagtgtggtgagatgc
acagctctggcaggtttgatgattgagcagaactttccagccatcgcaatccacaggggt
atgaaacaggaagagagattggccaagtacacacagttcaagaacttccagaagcgtatc
ctggtagctaccaatctgtttgggcgcggaatggatattgaacgagtcaacatcgttttc
aactatgacatgccagagagttctgatacttacctccacagggttgcaagagctggcagg
tttggcactaaaggtttggcaattacgtttgtagcagatgaagaagatgccaagatcctt
aatgaagtacaggacaggtttgacgtcaacatcggagagctccctgaagaaattgacatc
tcctcttacattgaacaagtttaa
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