Apostichopus japonicus (Japanese sea cucumber): 139965099
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Entry
139965099 CDS
T10891
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139965099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajj03021
]
139965099
03036 Chromosome and associated proteins [BR:
ajj03036
]
139965099
Transcription machinery [BR:
ajj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
139965099
Coactivators
SAGA/TFTC/STAGA complex
139965099
Chromosome and associated proteins [BR:
ajj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
139965099
STAGA complex
139965099
TFTC complex
139965099
SAGA complex
139965099
SLIK complex
139965099
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
TFIID_NTD2
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_1st
CFAP251_N
DSE1_N
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_TEP1_C
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_DCAF4
PAC11
Beta-prop_WDR41
ASA1
Beta-prop_ELP1_1st
eIF2A
WD40_RFWD3
Ge1_WD40
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_Nup120_160
Tricorn_2nd
Beta-prop_DCAF12
HTH_71
Motif
Other DBs
NCBI-GeneID:
139965099
NCBI-ProteinID:
XP_071823435
LinkDB
All DBs
Position
23
Genome browser
AA seq
668 aa
AA seq
DB search
MATTMELEAEIKKEPDEDNSANAMDKQTLAAVLLFLKKNNLRATEELLKREAKVDGESAN
HSSTRSEQEVSSVLSAYQSEGDPSLYEANYRSLKHIIETALDSRKVEQTQLLYPVYVHMY
LELVYNGHEHAAIKLFQAFQNEQEDYHQDDLVQLATVTKKEHMRHSELIMNLRSSKYVLR
LSRDSYQSLKRQLQEKSNNVILNILQEHLYIDVFDGMPRSKEQIDAASGGMCGEAKRKAN
KSKMSFGLLKEPDINLLLDDEEEGVDGEDKPKKKKAKRLDVKKSKPDPNAPAQNRIPLPE
MRDVDKLEKLLSFRELSKRVHLSPDLLPSVCFYTLLNATQGLISVEISDDSSLLAAGFAD
SNIRLWTLTPKKLRSIKPAEILQELEKEAEDVMERIMDERSSTDCKVLVGHSGPVYATSF
SPDRNLLLSASGDGTVRLWNLFTFSTLVCYKGHNFPVWDVAFGPFGHYFVSCGKDRTARL
WTTESHQPIRLFAGHYSDTNCVCFHPNSNYVATGSCDRMIKVWDILNGKCVRVMTGHKGP
IHKVLFSPNGHFLASVSEDCSVMLWGLRHSNLIAELKGHTESIYSLSFCRDGNVLASGGL
DNVVKLWDVKKIFAEAESEDFNTAHQVQQNDSMQLLLGSYPTKNTTIHHLHFTRRNLLLA
VGAFSVTS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaccatggagcttgaagccgagatcaagaaggaacctgacgaagataattct
gcaaatgcgatggacaaacaaacattagcagctgttcttctatttttgaaaaagaacaac
ctgagggctacagaggagttgttgaagagagaagctaaagttgacggagaatcggctaat
cactcaagcacacggtctgagcaggaagtctcttctgtcctctcagcttatcagagtgag
ggagacccatctctttatgaagccaattacagaagcttaaagcatattatagaaactgct
cttgattcaagaaaggtggaacagactcaactcttgtaccctgtgtacgttcacatgtac
ctagagttggtatataacggccacgaacatgcagccataaaattattccaagcattccag
aatgagcaggaggattaccatcaggacgatcttgttcagctcgctacggtaacgaagaaa
gaacacatgagacacagtgaactgatcatgaacctcagatcaagcaaatacgtattgaga
ctgtcaagagactcgtaccaatccttgaaacggcaattacaggaaaagtcaaacaatgtg
atcctaaatattctgcaagaacacttgtacatcgatgtgtttgacggaatgccacgtagt
aaagagcagattgatgcagcttctggtgggatgtgtggcgaagccaagaggaaagccaac
aagagtaaaatgtcgtttgggttgttaaaggagcccgatatcaacctcttattggatgac
gaagaagaaggtgtggatggggaggataaacctaagaaaaagaaagctaagagattagat
gtaaagaagagcaaaccggatccaaatgctccagcacaaaacaggatacctttacctgaa
atgagggacgtggataagttggagaaattattaagttttcgagaattgtccaaaagggtg
catctaagtcctgatctgttaccatctgtttgtttctacacgctactgaatgctacgcaa
ggactaatatcggtagaaatcagcgacgattccagtctgctggctgctgggtttgccgat
tctaacattcgcctctggaccctgaccccgaagaagcttcggagtatcaaaccagcagaa
atattgcaagagttggaaaaagaagcagaggatgtcatggaaagaatcatggatgaaagg
agttctacagactgtaaggtacttgttggtcacagcggtcctgtttacgcaaccagtttt
agtccagacagaaatttactgctctctgcatctggagatggaacagtgaggttgtggaat
ctcttcaccttttccaccttggtctgctacaaaggtcacaactttccagtttgggacgtt
gcttttggtccgtttggtcactattttgtctcctgtgggaaagacagaactgcccgtctc
tggaccacagagagtcaccagccaatcagactatttgctggacactactcagatactaat
tgtgtgtgcttccatccaaacagcaactacgttgccacgggatcctgtgaccgcatgatc
aaagtctgggacattcttaacggaaagtgtgttcgggtcatgacaggtcataagggtcca
atccacaaggtcctcttttctccaaatggccattttttggcctctgtgagtgaggactgc
tcagtcatgctctggggccttcgtcatagcaacctgatcgcagagttgaaaggccatacg
gaatccatctattcgctgagcttttgcagagatggaaacgtcctcgcctctggtggtctc
gacaacgttgtgaaactctgggatgtcaagaaaatatttgcagaggcagaatctgaagac
tttaacactgcccaccaagtgcaacagaatgactctatgcaacttctgttaggctcctat
ccaaccaaaaacacgaccatacatcatcttcacttcacaaggcggaacttgttattggcg
gtgggagccttctctgttaccagctga
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