Apostichopus japonicus (Japanese sea cucumber): 139965099
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Entry
139965099 CDS
T10891
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139965099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajj03021
]
139965099
03036 Chromosome and associated proteins [BR:
ajj03036
]
139965099
Transcription machinery [BR:
ajj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
139965099
Coactivators
SAGA/TFTC/STAGA complex
139965099
Chromosome and associated proteins [BR:
ajj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
139965099
STAGA complex
139965099
TFTC complex
139965099
SAGA complex
139965099
SLIK complex
139965099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
TFIID_NTD2
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_ELP1_1st
eIF2A
WD40_RFWD3
Ge1_WD40
Beta-prop_WDR19_1st
WD_LRWD1
RMC1_N
Beta-prop_Nup120_160
Beta-prop_DCAF12
HTH_71
Motif
Other DBs
NCBI-GeneID:
139965099
NCBI-ProteinID:
XP_071823435
LinkDB
All DBs
Position
23:complement(13304779..13322822)
Genome browser
AA seq
668 aa
AA seq
DB search
MATTMELEAEIKKEPDEDNSANAMDKQTLAAVLLFLKKNNLRATEELLKREAKVDGESAN
HSSTRSEQEVSSVLSAYQSEGDPSLYEANYRSLKHIIETALDSRKVEQTQLLYPVYVHMY
LELVYNGHEHAAIKLFQAFQNEQEDYHQDDLVQLATVTKKEHMRHSELIMNLRSSKYVLR
LSRDSYQSLKRQLQEKSNNVILNILQEHLYIDVFDGMPRSKEQIDAASGGMCGEAKRKAN
KSKMSFGLLKEPDINLLLDDEEEGVDGEDKPKKKKAKRLDVKKSKPDPNAPAQNRIPLPE
MRDVDKLEKLLSFRELSKRVHLSPDLLPSVCFYTLLNATQGLISVEISDDSSLLAAGFAD
SNIRLWTLTPKKLRSIKPAEILQELEKEAEDVMERIMDERSSTDCKVLVGHSGPVYATSF
SPDRNLLLSASGDGTVRLWNLFTFSTLVCYKGHNFPVWDVAFGPFGHYFVSCGKDRTARL
WTTESHQPIRLFAGHYSDTNCVCFHPNSNYVATGSCDRMIKVWDILNGKCVRVMTGHKGP
IHKVLFSPNGHFLASVSEDCSVMLWGLRHSNLIAELKGHTESIYSLSFCRDGNVLASGGL
DNVVKLWDVKKIFAEAESEDFNTAHQVQQNDSMQLLLGSYPTKNTTIHHLHFTRRNLLLA
VGAFSVTS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaccatggagcttgaagccgagatcaagaaggaacctgacgaagataattct
gcaaatgcgatggacaaacaaacattagcagctgttcttctatttttgaaaaagaacaac
ctgagggctacagaggagttgttgaagagagaagctaaagttgacggagaatcggctaat
cactcaagcacacggtctgagcaggaagtctcttctgtcctctcagcttatcagagtgag
ggagacccatctctttatgaagccaattacagaagcttaaagcatattatagaaactgct
cttgattcaagaaaggtggaacagactcaactcttgtaccctgtgtacgttcacatgtac
ctagagttggtatataacggccacgaacatgcagccataaaattattccaagcattccag
aatgagcaggaggattaccatcaggacgatcttgttcagctcgctacggtaacgaagaaa
gaacacatgagacacagtgaactgatcatgaacctcagatcaagcaaatacgtattgaga
ctgtcaagagactcgtaccaatccttgaaacggcaattacaggaaaagtcaaacaatgtg
atcctaaatattctgcaagaacacttgtacatcgatgtgtttgacggaatgccacgtagt
aaagagcagattgatgcagcttctggtgggatgtgtggcgaagccaagaggaaagccaac
aagagtaaaatgtcgtttgggttgttaaaggagcccgatatcaacctcttattggatgac
gaagaagaaggtgtggatggggaggataaacctaagaaaaagaaagctaagagattagat
gtaaagaagagcaaaccggatccaaatgctccagcacaaaacaggatacctttacctgaa
atgagggacgtggataagttggagaaattattaagttttcgagaattgtccaaaagggtg
catctaagtcctgatctgttaccatctgtttgtttctacacgctactgaatgctacgcaa
ggactaatatcggtagaaatcagcgacgattccagtctgctggctgctgggtttgccgat
tctaacattcgcctctggaccctgaccccgaagaagcttcggagtatcaaaccagcagaa
atattgcaagagttggaaaaagaagcagaggatgtcatggaaagaatcatggatgaaagg
agttctacagactgtaaggtacttgttggtcacagcggtcctgtttacgcaaccagtttt
agtccagacagaaatttactgctctctgcatctggagatggaacagtgaggttgtggaat
ctcttcaccttttccaccttggtctgctacaaaggtcacaactttccagtttgggacgtt
gcttttggtccgtttggtcactattttgtctcctgtgggaaagacagaactgcccgtctc
tggaccacagagagtcaccagccaatcagactatttgctggacactactcagatactaat
tgtgtgtgcttccatccaaacagcaactacgttgccacgggatcctgtgaccgcatgatc
aaagtctgggacattcttaacggaaagtgtgttcgggtcatgacaggtcataagggtcca
atccacaaggtcctcttttctccaaatggccattttttggcctctgtgagtgaggactgc
tcagtcatgctctggggccttcgtcatagcaacctgatcgcagagttgaaaggccatacg
gaatccatctattcgctgagcttttgcagagatggaaacgtcctcgcctctggtggtctc
gacaacgttgtgaaactctgggatgtcaagaaaatatttgcagaggcagaatctgaagac
tttaacactgcccaccaagtgcaacagaatgactctatgcaacttctgttaggctcctat
ccaaccaaaaacacgaccatacatcatcttcacttcacaaggcggaacttgttattggcg
gtgggagccttctctgttaccagctga
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