Apostichopus japonicus (Japanese sea cucumber): 139965361
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Entry
139965361 CDS
T10891
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139965361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajj03021
]
139965361
03041 Spliceosome [BR:
ajj03041
]
139965361
03036 Chromosome and associated proteins [BR:
ajj03036
]
139965361
Transcription machinery [BR:
ajj03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
139965361
Spliceosome [BR:
ajj03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
139965361
Complex B
139965361
Complex C
U2 SnRNP specific factors
139965361
Chromosome and associated proteins [BR:
ajj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
139965361
TFTC complex
139965361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML_2
WD40_WDHD1_1st
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
139965361
NCBI-ProteinID:
XP_071823754
LinkDB
All DBs
Position
3:complement(19180821..19216008)
Genome browser
AA seq
1219 aa
AA seq
DB search
MFLYSLTLQRASAIIQSIHGNFDGSKQQQIVVARGKILELIKLDPNTGKIYTLLSHEVFG
VIRAIMAFRLTGGNKDYVVVGSDSGRIVILEYVASKNAFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAFMVGAIEKQKLVYILNRDAQARLTISSPLEAHKSSTFSFHIVGVDVGFENP
MFACLEFDYEEADSDPTGEGAQNTSQLLTYYELDLGLNHVVRKYSEPLEEHGNFLIAVPG
GSDGPSGVLVCSENYITYKNLGDQPDIRMPIPRRRNDLDDPERGMIFVCSTTHKTKSMFF
FLAQTEQGDLFKITLETDEDMVTEVRMKYFDTVPVATTMNVLKTGFLFIAAEFGNHYLYQ
IAHLGDDDDEQEFSSATHLEEGETFFFAPRPLRNLVEVDQLESLSPILNCTIADLANEDT
PQLYVACGRGPKSSMRVLRHGLEVSEMAVSELPGNPNAVWTVKRKAEEEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSSSLIGDDALLQIYPDGIRHIRADKRVNEWKTPG
KKNIVKCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKEMSTDVKCMSLASVPSGEQ
RARFLAVGLDDNTVRIISLDQNDCLQPLSMQALPAPAESLCIVEMGSGSDTREERGEDRG
TSGGLFLNIGLQNGVLLRMVLDSVTGDLSDTRTRYLGSRPVKLFRIFMQGSEAVLAMSSR
SWLSYWYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVS
TPLKYSPRKFAVLPDSSNVVVIETDHNAYTETTKAQRKQQMAEEMVEAAGEEDRELAAEM
AEAFLKEDQQESEFGSPKAGAGMWASQIRLLNPVQGNTLDTIRLEQNEAAFSLSVCKFNN
HPDQTYVLIGTAKDLTMSPRTCSGGIIYTYLVKEEGNEIELIHKTLVDDVPAAICPFQGR
VLIGVGKLLRIYDLGKKKLLRKCENKHIPNFIVNVTSVGQRIVVSDVQESLHFVRYKRQE
NSLVIFADDTYARWVTATCILDYDTVMCADKFGNISVIRLTSSVNDSVDEDPTGIKALWD
RGVLSGASQKADPIATFHVGETVLSLQKCTLIPGGSESVVYTTLSGAIGILVPFTSHEDH
DFFQHLEMHMRAEYPPLCGRDHISYRSYYFPVKNVIDGDLCEQFNSMESGKQKSVAEELE
RNPSEVSKKLEDIRTRFAF
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtactcgttgacccttcagagggcttcagccatcatccaatccatccatggc
aactttgacggttccaagcaacagcagattgtcgtggctcgtggcaaaatcctagaactg
atcaagctggacccaaacacggggaaaatatacaccttactcagtcatgaagtctttggg
gttatcagggcaatcatggcttttaggctcactggtggcaacaaagactatgtggtagtt
ggatcagattctggaaggatcgtaatcttggagtatgtagcatcaaaaaatgcctttgaa
aaggtacatcaagagacgtttgggaagagtggttgtcgtagaatcgtccctggtcagttc
ctagccgtggaccccaagggtcgtgccttcatggtcggtgccatcgagaaacagaaactt
gtgtacatcctcaacagggatgcccaggccaggttgaccatatcttcccctctagaagcc
cacaaatccagtactttctcttttcatatcgtcggagtcgatgttggttttgagaacccc
atgttcgcctgtctcgagtttgattatgaggaggcagacagtgatcccacaggagaagga
gcacagaacacctctcagctgctcacctactacgagctggacctcggcctcaaccacgtc
gtccgcaagtacagcgagcctttagaagaacacggaaacttcctcatcgcagttcctggt
ggtagtgatggtccaagtggagtcctggtgtgttcagagaattacatcacatacaagaat
cttggagaccagccggatataagaatgccaattccaagaagaaggaatgatctagacgat
ccagagaggggtatgatatttgtctgcagcacaactcacaaaaccaagtccatgttcttc
ttcctggctcaaacggagcaaggagacctcttcaaaatcaccttggagacggatgaagac
atggtcacggaggtgaggatgaagtattttgacacggtgcccgtggcgaccaccatgaat
gtactcaagacggggttcctcttcattgctgcagagtttggcaatcactacctctaccaa
atcgctcatctcggtgatgacgacgacgagcaagaattcagcagcgccactcatctcgag
gaaggagaaaccttcttttttgctcccaggcctctcagaaatttggtggaagttgatcaa
ctggaaagtttgtcacccatcctcaactgtaccattgctgatttggccaatgaggacact
ccacagctgtatgtagcgtgcggacgaggaccaaagtcctcgatgagggttctcaggcac
ggtttggaggtttcagaaatggcggtgtctgagttgcctggtaaccccaacgctgtctgg
accgtgaagcgtaaagcagaagaggagtacgatgcttacatcattgtgtccttcgtgaac
gctactctggtcctttctatcggtgaaaccgtagaagaagtcacagattcagggtttctc
ggaaccacaccaacactctcatcctctctcataggagatgacgctcttcttcagatatat
ccggatggtattaggcatattcgagctgataagcgtgtcaacgagtggaagacacccggc
aagaagaacatcgtcaaatgtgctgtcaaccagagacaggttgtgattgctttgactggc
ggagaacttgtgtactttgagatggatccaaccggccagctgaatgagtatacagagagg
aaggagatgtccacagatgtgaagtgcatgagtctggctagcgtaccgtcaggtgaacag
agggctcgcttcttggcggtcgggctggatgataacactgtcagaatcatatccctggac
caaaatgattgtttgcaaccactcagtatgcaagccttaccagctccagccgagagtctc
tgcatcgttgagatgggatctgggtccgatactagggaggaaagaggcgaggacaggggg
acgtcagggggtctgttcctgaacattggtttacagaatggtgtcttgttgaggatggtc
ttagattcagtgaccggagacttatctgatacgagaacaagatacctcggctcaagacct
gtcaagctctttagaatatttatgcaagggtcagaggctgtgcttgccatgtccagtcga
tcgtggttgagttactggtaccagtccaggttccatctgacaccactctcttatgagacg
ttggagtacgcctccggctttgcctcggagcagtgtccagagggcatcgtagctatctct
accaacacactgagaatcttggctctggagaagttaggagcagtattcaaccaggtctcg
acacctttaaagtacagtccaaggaagtttgcagtcctgccagactccagtaatgtagtc
gtcatagagacggaccacaatgcatacacagaaaccacgaaggctcagcgaaaacagcag
atggccgaagaaatggtagaagctgctggtgaagaggatagagaattggcagctgagatg
gcagaagcattcctgaaggaggaccaacaagagagcgagtttggatctcccaaggccggt
gccgggatgtgggcctctcagatcaggctactgaatcccgtccagggaaacaccctagat
acgatcagactggagcagaatgaggctgcctttagcctgtcggtctgtaagtttaacaac
cacccagaccagacgtacgtcttgatcggtacagccaaggatctgaccatgagccccagg
acctgttctggaggtatcatttacacctacttggtcaaggaggaaggcaacgagattgaa
cttatacacaagactctggtagatgacgttcctgctgcaatatgtccattccaaggaaga
gtactcattggggtcggaaagctgctgagaatatacgaccttggcaaaaagaaactgctg
agaaaatgtgaaaataagcacattccaaacttcatcgtcaacgtcacctccgttggtcaa
cgcatcgttgtcagcgacgttcaggagagcctccattttgtccggtacaagagacaggag
aacagtctggtgatatttgcggatgacacgtacgcgagatgggttacagctacctgcatc
cttgactacgacacggtcatgtgtgccgacaaatttggcaatatttcagtgatccgtctg
acgtccagcgtgaatgacagcgtagatgaggacccaactggcatcaaagccctttgggac
cgaggcgttctgagtggagcatctcagaaggcagaccccattgccactttccacgtgggt
gagacggtcctgtcactacaaaagtgtaccctcatcccaggtggttccgagtcggttgtg
tacaccacactttcaggagctattggaatcttagtccccttcacatcacatgaggatcac
gatttcttccagcatcttgagatgcacatgagagcggaataccctcctctttgcgggcga
gaccacatctcgtaccggtcatattacttccctgtcaagaatgtgatcgatggtgatttg
tgtgaacagtttaactctatggagtcagggaagcaaaagagcgtggccgaagaactggag
cggaaccccagcgaggtatcaaagaaactggaagacatcaggacaagatttgccttttaa
DBGET
integrated database retrieval system
