Apostichopus japonicus (Japanese sea cucumber): 139965523
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Entry
139965523 CDS
T10891
Name
(RefSeq) ATP-dependent RNA helicase DDX1-like isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ajj03041
]
139965523
03016 Transfer RNA biogenesis [BR:
ajj03016
]
139965523
Enzymes [BR:
ajj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139965523
Spliceosome [BR:
ajj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139965523
Transfer RNA biogenesis [BR:
ajj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
139965523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
RVT_2
Motif
Other DBs
NCBI-GeneID:
139965523
NCBI-ProteinID:
XP_071824061
LinkDB
All DBs
Position
3:23166873..23248493
Genome browser
AA seq
793 aa
AA seq
DB search
MQQQKQPRSIKHQDCKCTAVDKHRSSVSGSERALRLQGSKLSSFSAGTVQRVKMTAFAEF
GVMPEICEAVEDMDWLLPTDVQSEAIPLILGGGDVLMAAETGSGKTGAFCLPVIQIVHET
LREKAEGKSTSKVTAPKADSTNWRMNIYDRGESMAIDKEGLLCQSREHHSWYGTRSNKGV
SNRGKYYYEATVTDEGLCRVGWATAKAKLDLGTCKDGFGFGGTGKKSFGRQFDTYGELYG
MGDTIGCFLDLDAGVISYSKNGIDLGQAFAIPGHLQKQTFFAAVVLKNAEMKFNFGSFTF
KHQPSNGYVGLSESDPSCVSPSPIHGGGAVQSSKAAPNAPMAIIIEPSRELAEQTLNQIK
KFKVHISEFRPRELLIIGGAPAKEQIDALNRGVDIVVATPGRIDDLIGTGKLSLSQVRFF
ILDEADGLLSAGYSNQIDRMWKQIPQVTADGKRLQMVVCSATLHSFDVKKLAERIMHFPT
WVDLKGQDSVPDTLHHVVVKVNPQEDLSWQRGGQKVQTDGVHYNDQMHYGSQDKETLSEG
IKILKADYLIKAIQEHKMDKAILFCRTKLDCDNMEKYMKSLGGGPKAVPKHQFSCVCLHS
DRKPPERRENLQKFKDDRVRFLICTDVAARGIDVRGVPYVVNVTMPDEKENYVHRIGRVG
RADRMGLAISLVGSVPEKVWYHSNCSNRGRGCHNTDLTTRGGCCIWYNEMQYLGDIEEHL
GITIDQIGPEMKVPVNEFDGKVVYGERRKLTGSSYKGHADILAPAVSELADLECKAQSSF
LRFSGMQDNLFAM
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaacaaaagcaaccaagatcgataaagcaccaagactgcaaatgcactgctgtc
gacaaacacaggtcctcggtctctggaagtgaaagagcattgagactacaggggagcaag
ctttcttctttctctgcaggcacggtacaaagagtgaaaatgacagcatttgctgaattt
ggagtaatgcctgagatttgcgaagcagtggaagatatggattggttgttacctaccgat
gttcagtccgaagccataccactgatcctcggagggggagatgtactcatggctgccgag
actggaagtggcaagactggggctttctgcttaccggttattcaaatagtccacgagaca
ttacgagaaaaagctgagggaaagtcaacttcaaaggtgacagctccaaaagcagattca
acgaattggaggatgaacatttacgacagaggggagtccatggccattgacaaagagggc
ctgctatgtcaaagcagggaacaccattcctggtatgggactcgctccaacaaaggggta
tcaaaccggggcaagtactactacgaggcgaccgtcacagatgaggggctatgtagggtc
ggatgggccacggctaaggctaaacttgatctaggtacatgtaaagatggctttggcttc
ggtgggaccggtaagaaatcgtttggaagacaattcgacacatacggtgagctgtatggt
atgggtgatacgattggttgcttcctggatttagacgctggtgtcatatcttactccaag
aacggaattgatttgggtcaagcatttgccattcctggtcatcttcagaagcaaaccttc
tttgcagctgtggtgttaaagaatgcagagatgaagtttaactttggttccttcacattc
aagcatcaaccttctaatggatatgtgggtttgtcagaatctgatccaagctgtgtgagt
ccatctccaattcatggtggaggtgcagtgcaatcatccaaagctgccccaaatgcccct
atggctatcattattgagccctccagggagcttgctgaacagacattgaatcaaatcaag
aaattcaaggtacacatatcggagtttcgtccaagggagttactaatcatcggtggtgca
ccagctaaggagcagatcgacgctcttaatagaggggtggacattgtcgttgctacgcca
ggaagaatcgatgatctcatcgggactgggaagctgagtctttcacaagttcgtttcttt
attttggatgaggcagatggattgttatctgctggttatagtaaccagatcgacagaatg
tggaagcagataccacaagtcacagcagatggtaaaaggctacagatggtggtgtgctct
gctacattgcattcctttgatgtgaagaaattagcagagagaattatgcattttcctacg
tgggttgatttgaaaggtcaggacagcgttccagataccttacatcatgtggtcgttaaa
gtaaaccctcaggaggatctctcatggcagagaggcgggcagaaagtccagaccgatggt
gtccactataacgatcagatgcattatggcagccaggacaaagagacgctctcggagggg
atcaagatcctgaaggcggattatttaatcaaggccatccaggaacacaaaatggacaag
gctatactcttctgcagaaccaaactagactgtgataatatggagaaatatatgaaatct
ctaggagggggtcctaaagctgttcccaaacatcagttctcatgtgtgtgtctccatagc
gacaggaagcctccagagagaagagagaacctccaaaagtttaaggatgatagagtccgc
tttctgatctgcacagatgtagccgccaggggtattgatgtccgaggtgtaccgtacgtg
gtaaatgtcactatgcccgatgagaaggagaactatgtacatcgcatcggtcgtgttggt
cgtgctgacagaatgggtttggcaatctccttggtcggctcagtaccagagaaggtctgg
taccatagtaactgcagcaatcgcggacgtggctgccacaacacagaccttacaactcga
ggtggctgttgcatttggtacaatgaaatgcagtacttgggagatatcgaagagcatctc
ggtataaccatcgaccaaatcggtccggagatgaaagtgccggtcaatgaatttgatggg
aaagttgtttacggtgaaagaagaaagcttacagggtcgtcgtacaaaggtcacgctgat
atactagcgcccgccgtgtcagagttggctgatctggaatgcaaagcccagtcgtccttt
ctccgtttctccggaatgcaagataacctctttgctatgtga
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