Apostichopus japonicus (Japanese sea cucumber): 139965636
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Entry
139965636 CDS
T10891
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71-like
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139965636
04121 Ubiquitin system [BR:
ajj04121
]
139965636
Enzymes [BR:
ajj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139965636
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139965636
Ubiquitin system [BR:
ajj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
139965636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
zf-C3HC4
SGL
zf-C3HC4_2
zf-RING_UBOX
ANCHR-like_BBOX
Vgb_lyase
DUF5711
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-RING_2
Phasin
Baculo_PEP_C
F_actin_cap_B
CENP-Q
ARA70
DUF5403
Motif
Other DBs
NCBI-GeneID:
139965636
NCBI-ProteinID:
XP_071824311
LinkDB
All DBs
Position
3:complement(25785298..25795361)
Genome browser
AA seq
766 aa
AA seq
DB search
MPMASAAGSDELNDSQLWCPLCSDRLNEPRILPCLHSFCKPCLEDKVHDKESVKCPVCFQ
ETALGGMGLDGLPSNMLINNLLDVVSGHDDELENGTTNSVQICTSCDDGLSATHLCKDCN
EALCDSCVSAHHRVKLTKDHLITEFDESGSSGKATPIPNFQYYSPHLPEHLTCYCNIHPN
EIVRLFCDTCNMAICRDCTLSEHQGHSCVYLQDAVQESKAMSVQLLREVSKTQKALESSL
TKVQAMRDRVTARCQTVTAEVRSTIARHVSSLEQREGEMLRKIEVVRQVKVQSLNQQVTE
ISNALSTLVENVEDGERVLQSGADMEILRMREKLVKQMQVLKNLQSYFNPHETDEIVFTP
PDNALLTAISSMGLLSTGAHASNSYATGGGLRRALIDKTTQILVHGKNHCNETSFTGGDV
VEAMLQDPKGKTQFGEVSDRQNGSYTVSYIPHLEGRHILSVTIRGKHIQGSPFLVSVGRP
RNYATIGAVLLTFGGEGDGDGLMCRPWGIAANKDGYVILADRSNNRIQVFKADGTFHHKF
GSPGSRNGQFDRPAGVSVTPDNNIIVADKDNHRIQVFTFNGQFLFKFGEKGSKNGQFNYP
WDIAVSNEGKILVSDTRNHRIQMFHADGSFWNKYGFDGPLWKHFDSPRGVAFTNEGYFVV
TDFNNHRLLVIHSDFQSAKFLGSEGTSNGQFLRPQGVAIDQEGNIIVADSRNNRIQVFQP
NGNFVCSFGSGPGVSLGELDRPSGICVSPDGLILVVDFGNNRVQAF
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgcccatggcttcagcagcaggatcggatgagctgaacgactctcagctatggtgtcca
ctgtgttccgatcgactaaatgaaccacgtattttaccctgtcttcacagtttctgcaag
ccttgccttgaggataaggttcatgataaagaaagtgtgaaatgtccagtttgtttccaa
gagacggctttgggagggatgggattagatgggttgccttctaacatgcttattaataat
ctcctggatgttgtcagtggccatgatgatgaacttgaaaatggaaccaccaattctgtg
caaatttgcacttcttgtgatgatggactttcagctactcacctctgcaaagattgcaat
gaggccctgtgtgatagttgtgtgtctgcgcaccatcgagttaaacttaccaaagatcac
cttatcacagaatttgacgaaagtggaagcagtggtaaggcaactccaatccctaacttt
cagtattattcgcctcatctcccagagcaccttacatgctattgtaatattcatccaaat
gaaattgttagacttttttgcgacacctgtaatatggccatatgccgtgactgcacactc
tcagagcaccaaggccatagttgtgtgtatctccaagatgcagtacaagaaagcaaagca
atgtctgtgcaactactcagggaagtctctaaaacacagaaggctctagaatcaagtcta
acaaaggtgcaggcaatgcgagatagagtcactgctcgatgccaaacggtgactgcagaa
gtgcggtccacaattgctcgtcacgttagttccttagagcaaagagaaggggaaatgcta
agaaagattgaagtcgttagacaggtcaaagtgcagtcgcttaatcaacaagtcaccgaa
atatccaatgctttgtccaccctcgttgaaaatgtggaggatggtgagagggtcttgcag
agtggtgcagacatggaaatcttaagaatgagagaaaagttagtgaaacagatgcaggta
ttgaagaaccttcagagttatttcaaccctcacgaaacagatgagatagttttcacacca
ccagataatgccttgctgactgcaatttcatccatgggactactcagcacaggtgctcat
gcatccaattcgtatgctacaggaggcggtctcaggagagccctgattgacaagacaaca
cagatactggtacatggcaagaaccactgcaacgaaacgtcttttactggtggggatgtc
gtcgaggcgatgctgcaagacccgaaaggtaaaacacagtttggcgaggtatctgataga
cagaatggtagctataccgtgagttacatacctcatttagaagggagacacatactctca
gtgaccatcaggggaaagcacattcagggtagtccatttctcgtcagtgtgggaagacca
aggaactatgccactattggtgcagttctgctcacatttggtggtgagggagatggggat
gggttgatgtgtcgcccgtggggtattgccgccaacaaagatgggtatgtaatattggcc
gaccgtagtaataacagaattcaggtgtttaaagccgatggtactttccaccataagttt
ggttcccctgggtctagaaatggccagtttgaccgccccgctggtgtttcagtaacacca
gacaataacattattgtagcagataaagataatcataggattcaggttttcacatttaat
ggacaattccttttcaaatttggtgagaaaggaagtaaaaatggccagtttaactaccct
tgggacattgctgtaagcaatgaaggaaagatcctggtttccgatacccgtaaccaccgt
atccaaatgtttcatgccgatgggtccttttggaataagtatggctttgatggtcccctg
tggaaacactttgattctccgagaggtgtagctttcactaacgaaggttactttgtggtc
acagacttcaataatcaccgcctcttggttatccactctgacttccaatctgccaagttt
cttggctcggaggggactagtaacggccaattcttgaggcctcagggggtggcaatcgac
caggagggtaatatcatcgtggcagactctagaaataatcggattcaggtctttcagcct
aatggtaattttgtgtgctcattcggttcgggacccggtgtgagtctgggggaactcgat
cgtccctctggcatatgtgtttcccccgatggtctcatactcgtcgtagactttggaaat
aatagagtgcaagcattttga
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