Apostichopus japonicus (Japanese sea cucumber): 139965732
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Entry
139965732 CDS
T10891
Name
(RefSeq) phospholipid-transporting ATPase ABCA3-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj02010
ABC transporters
ajj04148
Efferocytosis
Brite
Transporters [BR:
ajj02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
139965732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC2_membrane_3
ABC_tran
R1_ABCA1
AAA_21
DUF4162
AAA_23
AAA_29
RsgA_GTPase
MukB
Motif
Other DBs
NCBI-GeneID:
139965732
NCBI-ProteinID:
XP_071824493
LinkDB
All DBs
Position
3:complement(28481389..28551299)
Genome browser
AA seq
1773 aa
AA seq
DB search
MGWLSQLMLLMWKNFILQLRRPIGTAVEILMPFGLTCLLLIARTLLTEEQICFSIYQPSF
GESSAIFESGNLDLDKLEGCFVNGTNCPALVYYPKNNLTTELFTLVEGFIGNTSLQISHQ
DFSSEEELAMVVAEEPEYYYGAILFDIDRDATEFPPETSYRIRLHHEIVSSETWNTRRIY
PSFQIPGPRTSNEYKTRFLLLQNTVDKLISGSHLDLFTAITFATIETEVQQYPYPAYLQD
DFITTIEFLLPFVLCIAFIYSAGTITKEIVLEKQLRLKESMKMMGLDNWIHWLAWFLKSL
IFLLIPIVLITILFTVGNLFQYSNIFTLFVFLLLWVLAGITWSFAISVIFTNARLGLIFG
MVLWYVSYVPAGFFDVDDTPVPALFLLCLMPNCALTFGVSIFARFESKGVGVQWSSLWES
PSVDGSFTLAYALIMLAVDAVFFFLFTWYIEGVFPGKYGIPKPFYFPFQPSYWCGMKPPA
PTGGSVTPDNTMEMNRTGMTSNDHEEEPNLEKGISIKNMTKVYKSAVGKKMAVDDLSLNM
YKGQITALLGHNGAGKTTTMSILTGLFPPTRGTASVNGHDIITDIEGVRSSLGLCPQHNV
LFDRLTVKEHLDFFIQLKGGSGKAAAKEVRQMIEDLQLVDKTNSVSEKLSGGMKRKLSCA
VALIGGSEIIILDEPTSGMDPYARRATWELLLKYKEGKTMVLTTHFMDEADLLGDRIAIM
ANGQLITTGSSLFLKNRFGVGYHLTFVRNESCDVEQLTGFVKKRVPEAHLESCLAREVDY
ILPIDKTSVFSELFNLLNDKKSELGVDSFGISVTTMEEVFMKVGDLAESTQNPEGADNQA
WVKDNGTYSNGKNNHANHNGGATNGDITVTMTSMGVPENEYLTGIVLKLFQFIAIFQKRL
ICAIRDPKSWILQIVLPLVFVLLGLTVAKTGTRLDADPARELNLANISRVAPNGGAKAFV
ADLRADRSTEYFKHLESVLGEVNVELVNITEQVWTLYNDNQVGYVNGKVYNESTDCCVYT
NLILSPNCTGIYNSEGQINEVCESYDNFGYNNCPACLLATFADAEDNCTSEPQEYPLTDM
TTYFQEYILENSKQADFYFEEYVAGYTIEDAYTVFGTPTSKVKSWYSNQAYHTSPEALNA
LSNALLKYFTNESFSLSVTNFPLPFATTTQVTNSGVDPDTFNLAILILFGMSFLTASFLP
FIVSEKSSKAKHLQLVSGLDRVTYWVANYCWDFVNFLIVFVILLACFAVFQVAALSGPNL
GTVAVILLLFGWAAIPFVYLVSTLFKTAVNGYAITTILLAIFGMALYLTVFLVEFLVENK
AIGEALDHIFMVLPTYAMVRAIGLLSVNHGVRDTCTISEIQKEICMQANISFEENNYAWD
QPGVGQNLVYMTIEGVVFFLLVLLTEFMSFSSIFVSRSHVIMGGQEDEDVAKERRRVHEM
NYRSEDQAIVIKDLNKVYFGAERPAVQDLALAIPRGECFGLLGVNGAGKTTTFGMLTGDV
RMTSGHAYIQGMSIRSDMRKAQRLMGYCPQFDALVEKLTGRETLTMFARLRGIPAKSIPS
VVDSTIEHLDLVKYADKLCGNYSGGNKRKLSTAIAMVGSPPTVLLDEPTSGMDPKARRHL
WNAILSVMREGKSVVLTSHSMEECEALCTRLAIMVNGQFKCLGSVQHLKSRFGRGYTMIV
KTTGVTQAVQEFILTTFPGATLLEIHQGTLQFQVYDDNMNWSRIFGSLEQSKERLNITDY
SVSQTPLEQVFINFAKEQFAETKKSKRCCCCYC
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atggggtggttatcgcagctcatgctgttgatgtggaaaaattttattctacagctaaga
agaccaataggaacagcggtagaaatactgatgccatttggcctcacctgtctgttgttg
attgctcgaaccctgttaacagaagaacagatatgtttttctatctaccagccaagcttt
ggagaaagtagtgctatctttgaatcgggcaatcttgatctagacaagctggagggatgc
tttgtcaatggaacaaattgtccagctctcgtgtattacccaaagaataacttgacaact
gaattgtttacattggtcgagggtttcattggtaacacaagccttcaaatatcgcatcaa
gatttcagctcagaagaagaactagcaatggtagtagctgaagaacccgagtattattat
ggagcgattctcttcgacatagacagagatgctacagaatttcctcctgaaaccagctac
cggatccggcttcaccatgagattgtgtcaagtgagacttggaataccaggaggatctat
cccagctttcagattccaggccctagaactagcaatgaatacaagaccaggtttctgctg
cttcagaataccgttgacaagttgataagtggttctcacctggatttgtttacagccata
acgtttgcaacaattgaaacagaagttcagcaatacccgtacccagcctacctccaggat
gactttatcactactattgaattcttgttgccctttgttctctgtattgccttcatctac
tcagctggaacaataacgaaggaaattgtccttgagaagcagttgagattgaaggagagt
atgaagatgatgggtttggataattggatccactggttagcttggttcctcaagagtctc
atattcctcctcattcccatcgttcttatcaccattctcttcacggtgggaaacctcttc
caatatagtaacattttcacacttttcgtgttcctgttgttgtgggtgctggctggcatc
acttggagttttgctatcagcgtcatctttacaaacgctagactcggactgatatttgga
atggtgctctggtatgtttcctacgtccccgctggcttcttcgatgtcgacgataccccc
gtgccggccctgttcttactctgcctaatgccgaactgtgcccttacgtttggagtctcc
atctttgctcgatttgaaagtaaaggagtgggtgtccagtggtcttcattatgggaaagc
ccctctgtagatggcagctttactttggcctatgctctgatcatgcttgcagtggatgct
gtcttctttttcctctttacgtggtacatagagggcgtgtttccagggaagtatggtatc
ccaaaaccattctacttcccattccaaccgtcatactggtgcggaatgaaacccccggcc
ccaactggaggttctgtgacccctgacaataccatggagatgaatcgaacaggaatgacc
agtaatgatcatgaagaagaaccaaacctggagaaaggaatcagtatcaagaatatgacc
aaagtctacaagagtgctgtgggcaagaagatggcagtagatgacctgtcactgaatatg
tataaaggacagatcacagcactgttgggtcacaacggtgccggcaagaccaccactatg
tcgatcctgactggtctcttccctcccacgcggggaaccgcttcggtcaacggacatgac
atcatcacagatatcgaaggagtccgttccagtctaggcctctgtcctcagcacaacgtt
ctctttgaccgtctcacagtgaaagaacatttggatttcttcatccaactgaagggagga
agcggtaaggctgcagctaaggaagtgaggcagatgattgaggatctacaactggtagat
aaaaccaacagcgtatcagagaaactgtcgggaggaatgaaacggaagcttagctgcgcc
gtggccttgatcggaggatccgagatcatcatcctggatgagcccacatcaggaatggac
ccgtacgcccgcagggccacctgggaactactgctgaagtataaggagggcaagacaatg
gtgctgaccactcacttcatggacgaagctgatcttctgggtgaccgaattgctatcatg
gctaacggccagcttatcaccactggcagctctctattcttaaagaaccgattcggtgta
gggtaccatctgacctttgtccgaaacgagagctgtgacgtggagcagctgaccggattc
gtgaagaagcgtgtcccagaagcacacctggagagttgtctagccagggaagtggactat
attctccccattgataagaccagcgtgtttagtgagctcttcaacttgttgaacgacaaa
aagtcagagttgggcgtggacagttttgggatttccgtgacaaccatggaagaagtattc
atgaaggttggagatctggccgaatccacccaaaatcccgagggagccgacaaccaagcc
tgggtgaaagacaacggtacatacagtaatgggaagaacaaccacgcaaaccacaatggt
ggtgctaccaatggtgacatcacagtgaccatgacatccatgggtgtcccagaaaacgag
tacttgacaggaatcgttctgaagcttttccagttcatcgctatcttccagaagagactg
atctgtgccattcgcgatcctaaatcttggatcctgcaaatcgttctgcccttagtcttt
gtcctcctcggattgaccgtcgcgaaaacaggaaccaggctggacgctgaccctgccaga
gaactgaatttagccaacatctcacgcgtagctccaaatggaggagccaaggcatttgtt
gcagacctaagagctgatcggtccactgaatattttaagcatttggaatctgtactcggc
gaagtgaacgtagaacttgtgaacatcacagagcaagtttggaccctgtataacgataat
caagtaggatatgtgaatggcaaagtttacaatgagagcactgactgctgtgtctacacg
aatcttatcctgagtcccaactgtaccgggatctataatagtgaaggacaaatcaacgag
gtctgtgaaagttatgacaactttggctataataattgccctgcgtgtttgctcgccacc
ttcgcagatgccgaagacaattgtacctcggaaccacaagagtatccccttacggatatg
accacatacttccaggaatacatccttgaaaacagtaaacaggccgacttttattttgaa
gaatatgtagctggctacaccatagaggatgcatatactgtatttggtacaccaacatca
aaagttaaaagctggtacagtaaccaagcctaccatacatcaccagaggcattgaatgct
ttgagtaatgcccttctcaagtatttcaccaacgaaagtttctctttatcggtcactaac
ttcccactaccatttgctacaacgactcaggtaaccaactccggcgtggatccagatacc
tttaatctagccatcttgatcctgtttggcatgtcattcctcacagctagcttccttccc
ttcatagtctcagagaagtctagcaaggccaagcaccttcaacttgtgagtgggttggac
agagtcacctactgggtggccaactactgctgggactttgtcaattttctgattgtcttt
gtgatactattggcttgttttgctgtttttcaagttgccgctctcagtggaccaaacctt
ggaacagtcgctgtcattttgctcctgtttggatgggctgcgataccgtttgtctacctc
gtgtcgaccctcttcaaaacagctgtcaatggatacgccatcaccaccatcctcctagct
atctttggaatggctttgtacctgactgtatttttggttgagttcctcgtggagaataaa
gcaatcggtgaagccttggaccacattttcatggtactaccaacttacgcgatggtccga
gcgattggcctattgtcagtcaaccatggtgtgagggacacctgcaccatctcggaaata
caaaaggagatctgtatgcaagccaatatatcctttgaggaaaacaattatgcttgggac
caaccaggagttggacaaaatctggtctacatgacaatcgagggcgtggtgttctttctc
ttagttctgcttacagagttcatgagcttttcatcaatatttgtgtccaggtctcacgtt
atcatgggaggccaggaggacgaggatgtcgcaaaggagagaagacgagtccacgagatg
aattatcgaagtgaagatcaggccatcgttatcaaagacctgaataaggtatactttggt
gctgagagaccagctgtacaggacctagctctggccataccgagaggagaatgctttgga
ctacttggcgtgaatggtgccggtaaaaccacgacatttggcatgctgaccggggatgta
agaatgacatcaggacatgcctacatacaaggcatgagcatcaggagtgacatgaggaag
gcacaaagacttatgggatactgtccacagtttgatgcgctagtcgaaaaactgaccggc
cgagagacactgaccatgtttgcgaggctgagagggataccggccaagagtattcccagc
gtagtggactctaccatagagcacttagacttggtcaagtatgctgacaaactctgtggc
aattacagtggaggtaacaagagaaaactgagtactgccatagctatggttggtagtcct
cctacagttctcctggatgagcccacctctggaatggaccctaaggcgcgacgacatctc
tggaatgccatcctcagtgtcatgagagagggcaagtctgttgttctgacatcacacagc
atggaagaatgtgaagcgttgtgcacccgcctagctatcatggttaacggtcagtttaag
tgcctgggaagtgtacagcatcttaagagcaggtttggcagaggctatactatgattgta
aagaccactggagttacacaggctgttcaggagtttatcctgactacattccccggagcc
actttgttggagatccatcagggtacccttcaatttcaagtttatgatgataacatgaac
tggtctcgtatctttggttcattggaacagtccaaggagagactcaacataacagactac
agcgtgagccagactccactggaacaagtattcatcaattttgcaaaggagcaatttgca
gaaacaaagaaaagtaaacgatgttgctgttgttattgttaa
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integrated database retrieval system
